Wall clock time and date at job start Mon Mar 30 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.76206 * 102.99841 * 179.97438 * 11 10 9 13 13 C 1.38995 * 120.07754 * 359.73050 * 12 11 10 14 14 C 1.38068 * 119.91410 * 179.69486 * 13 12 11 15 15 C 1.38324 * 120.07826 * 0.60105 * 14 13 12 16 16 C 1.38281 * 120.16407 * 359.66892 * 15 14 13 17 17 C 1.50693 * 119.96088 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47503 * 269.98083 * 17 16 15 19 19 C 1.38108 * 120.07983 * 0.03052 * 16 15 14 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08001 * 120.04292 * 359.97438 * 13 12 11 26 26 H 1.07991 * 119.95742 * 180.27490 * 14 13 12 27 27 H 1.07997 * 119.91754 * 179.70281 * 15 14 13 28 28 H 1.09001 * 109.47509 * 29.98518 * 17 16 15 29 29 H 1.09007 * 109.47390 * 149.97986 * 17 16 15 30 30 H 0.96699 * 114.00499 * 180.02562 * 18 17 16 31 31 H 1.07991 * 120.04246 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 6 2.6267 -6.4348 0.0004 13 6 3.9565 -6.0303 -0.0062 14 6 4.9635 -6.9748 -0.0005 15 6 4.6504 -8.3221 -0.0007 16 6 3.3286 -8.7282 0.0003 17 6 2.9926 -10.1972 0.0006 18 8 2.8850 -10.6617 -1.3465 19 6 2.3159 -7.7891 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 4.2016 -4.9785 -0.0113 26 1 5.9969 -6.6612 -0.0012 27 1 5.4402 -9.0587 -0.0011 28 1 3.7797 -10.7499 0.5137 29 1 2.0445 -10.3531 0.5154 30 1 2.6696 -11.6013 -1.4227 31 1 1.2838 -8.1070 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085537272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:29 Heat of formation + Delta-G solvation = -63.236404 kcal Electronic energy + Delta-G solvation = -13655.945720 eV Core-core repulsion = 11219.920830 eV Total energy + Delta-G solvation = -2436.024890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25101 -37.49871 -35.85643 -33.23798 -32.55540 -31.97663 -27.63709 -26.74322 -24.18062 -22.93119 -22.37734 -18.73432 -18.36711 -18.24877 -17.18264 -16.61194 -16.48167 -15.73673 -15.67043 -15.05325 -14.77101 -14.49892 -14.04155 -13.98453 -13.68826 -13.13029 -12.97274 -12.62362 -12.33573 -12.29551 -11.96152 -11.76114 -11.35415 -11.04482 -10.94501 -10.70866 -10.61937 -9.93167 -8.44051 -8.25760 -6.39382 0.17708 0.31632 0.58056 1.40838 1.41148 1.53572 1.55233 2.39149 2.60235 3.08078 3.54468 3.87755 4.04017 4.10378 4.13644 4.24852 4.29800 4.38952 4.51403 4.59543 4.76053 4.84043 4.99383 5.27803 5.32669 5.40166 5.42057 5.52484 5.69856 5.92018 6.06884 6.74265 6.94593 7.30401 8.86433 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.056885 B = 0.004285 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.103868 B = 6532.532894 C = 6924.127859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.065 4.065 11 S -0.168 6.168 12 C -0.094 4.094 13 C -0.146 4.146 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.087 4.087 17 C 0.120 3.880 18 O -0.590 6.590 19 C -0.099 4.099 20 H 0.266 0.734 21 H 0.000 1.000 22 H 0.001 0.999 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.401 0.599 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 -19.791 1.012 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.004 3.996 10 C -0.213 4.213 11 S 0.077 5.923 12 C -0.206 4.206 13 C -0.169 4.169 14 C -0.121 4.121 15 C -0.130 4.130 16 C -0.089 4.089 17 C 0.043 3.957 18 O -0.400 6.400 19 C -0.123 4.123 20 H 0.075 0.925 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.141 0.859 26 H 0.171 0.829 27 H 0.172 0.828 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.251 0.749 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.379 -19.124 0.892 20.898 hybrid contribution 0.950 0.796 0.105 1.244 sum 9.329 -18.327 0.996 20.589 Atomic orbital electron populations 1.70117 1.07964 1.28094 1.50863 1.26021 0.95799 1.03544 0.94256 0.85277 0.79060 0.78132 0.77846 1.18256 1.20304 1.20260 1.21535 0.93751 0.91138 1.51726 0.91345 1.18707 0.93646 0.91238 0.95976 1.23620 1.00938 0.92242 1.04451 1.85602 1.14200 1.00397 1.92059 1.21948 0.96556 0.96983 1.05158 1.21481 0.91822 1.00884 1.02763 1.21383 0.99763 0.92747 0.98234 1.21408 0.96104 0.96289 0.99225 1.19922 0.93288 0.95502 1.00173 1.21024 1.01604 0.89147 0.83911 1.86526 1.94358 1.32338 1.26735 1.20798 1.00041 0.90274 1.01168 0.92487 0.98188 0.98064 0.89850 0.90032 0.85915 0.82865 0.82764 0.89866 0.91635 0.74861 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.04 2.31 4.98 29.85 0.15 2.46 16 10 C -0.06 -2.78 4.27 71.98 0.31 -2.48 16 11 S -0.17 -6.66 21.92 -56.49 -1.24 -7.90 16 12 C -0.09 -3.14 6.11 22.62 0.14 -3.00 16 13 C -0.15 -4.40 9.36 22.41 0.21 -4.19 16 14 C -0.10 -2.39 10.04 22.25 0.22 -2.17 16 15 C -0.11 -2.33 9.70 22.30 0.22 -2.11 16 16 C -0.09 -2.05 5.51 -19.89 -0.11 -2.16 16 17 C 0.12 1.94 7.17 71.23 0.51 2.45 16 18 O -0.59 -10.46 13.64 -148.98 -2.03 -12.49 16 19 C -0.10 -2.88 9.45 22.41 0.21 -2.67 16 20 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 21 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.08 3.41 7.76 -2.39 -0.02 3.39 16 24 H 0.08 3.37 7.73 -2.39 -0.02 3.35 16 25 H 0.12 3.77 5.88 -2.91 -0.02 3.75 16 26 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 29 H 0.07 0.91 8.08 -2.38 -0.02 0.89 16 30 H 0.40 2.72 9.12 -74.06 -0.68 2.04 16 31 H 0.13 3.52 8.06 -2.92 -0.02 3.50 16 Total: -1.00 -69.29 284.04 2.04 -67.25 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.45 Total: 7.42 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 2.55 Total: -43.63 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -2.03 Total: -12.49 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.24 Total: -7.90 kcal Total: -69.29 2.04 -67.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085537272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.013 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds