Wall clock time and date at job start Mon Mar 30 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48506 * 109.46824 * 269.99806 * 3 2 1 5 5 H 1.48505 * 109.47114 * 29.99427 * 3 2 1 6 6 H 1.48496 * 109.47446 * 149.99889 * 3 2 1 7 7 C 1.38650 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00236 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.35692 * 116.99780 * 185.05408 * 9 7 2 11 11 C 1.39036 * 119.92519 * 354.46029 * 10 9 7 12 12 C 1.37780 * 120.07031 * 179.74259 * 11 10 9 13 13 C 1.39635 * 119.92747 * 0.25228 * 12 11 10 14 14 C 1.47723 * 120.07505 * 179.97438 * 13 12 11 15 15 C 1.32647 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 15 14 13 17 17 Cl 1.80303 * 109.46848 * 124.99868 * 16 15 14 18 18 C 1.39643 * 119.85717 * 359.97438 * 13 12 11 19 19 C 1.37780 * 119.92438 * 0.02562 * 18 13 12 20 20 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.96095 * 0.02562 * 11 10 9 22 22 H 1.07994 * 120.03186 * 180.26993 * 12 11 10 23 23 H 1.08002 * 119.99591 * 359.97438 * 14 13 12 24 24 H 1.07997 * 119.99785 * 0.02562 * 15 14 13 25 25 H 1.09002 * 109.47298 * 244.99864 * 16 15 14 26 26 H 1.09006 * 109.47210 * 5.00411 * 16 15 14 27 27 H 1.07997 * 120.03933 * 179.97438 * 18 13 12 28 28 H 1.08002 * 119.96178 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0697 -3.5038 0.1086 11 6 3.4583 -3.4352 0.0945 12 6 4.2075 -4.5859 0.2083 13 6 3.5708 -5.8224 0.3325 14 6 4.3708 -7.0582 0.4541 15 6 3.7644 -8.2320 0.5725 16 6 4.5807 -9.4927 0.6960 17 17 4.0902 -10.3828 2.1853 18 6 2.1759 -5.8882 0.3415 19 6 1.4326 -4.7338 0.2273 20 1 -0.4850 0.8401 -0.0004 21 1 3.9501 -2.4784 -0.0011 22 1 5.2861 -4.5314 0.2017 23 1 5.4496 -7.0059 0.4466 24 1 2.6857 -8.2841 0.5796 25 1 4.4101 -10.1230 -0.1768 26 1 5.6384 -9.2362 0.7579 27 1 1.6804 -6.8430 0.4370 28 1 0.3537 -4.7839 0.2347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086210992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:10 Heat of formation + Delta-G solvation = -7.284589 kcal Electronic energy + Delta-G solvation = -13538.447798 eV Core-core repulsion = 10966.972360 eV Total energy + Delta-G solvation = -2571.475439 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13261 -37.05805 -36.06090 -34.02071 -32.35583 -30.35266 -29.41658 -26.05124 -25.10428 -22.31860 -21.26542 -19.38797 -17.94278 -17.08600 -15.70695 -14.83884 -14.55628 -14.31397 -13.99643 -13.76033 -13.72306 -13.06902 -12.91927 -12.43178 -11.82767 -11.71996 -11.63172 -11.09223 -11.08657 -10.67068 -10.52961 -10.45605 -10.35719 -9.50628 -9.42690 -8.78768 -8.31200 -7.04262 -6.56935 -4.13548 1.36009 2.16168 2.33869 3.01323 3.07412 3.12429 3.17501 3.87709 4.56464 4.73039 4.89353 4.99470 5.14486 5.19854 5.35165 5.57722 5.70850 5.73789 6.07591 6.21373 6.52186 6.63646 6.67897 6.86182 6.98800 7.18745 7.31132 7.35178 7.70994 7.88061 8.88064 9.56239 10.60240 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.068134 B = 0.003986 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.856635 B = 7023.044918 C = 7267.311925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.161 3.839 11 C -0.239 4.239 12 C -0.049 4.049 13 C -0.178 4.178 14 C -0.044 4.044 15 C -0.226 4.226 16 C 0.014 3.986 17 Cl -0.195 7.195 18 C -0.055 4.055 19 C -0.196 4.196 20 H 0.272 0.728 21 H 0.129 0.871 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -11.887 0.246 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.166 4.166 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.106 3.894 11 C -0.258 4.258 12 C -0.067 4.067 13 C -0.179 4.179 14 C -0.063 4.063 15 C -0.244 4.244 16 C -0.048 4.048 17 Cl -0.169 7.169 18 C -0.073 4.073 19 C -0.215 4.215 20 H 0.082 0.918 21 H 0.147 0.853 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.139 0.861 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.873 -11.710 0.337 14.115 hybrid contribution 0.483 0.822 0.036 0.954 sum 8.356 -10.888 0.373 13.730 Atomic orbital electron populations 1.70041 1.06043 1.27998 1.44938 1.25356 0.95897 0.99032 0.96265 0.85668 0.78948 0.79758 0.78826 1.19744 1.20121 1.19079 1.21401 0.91966 0.80693 1.52803 0.88778 1.83951 1.34682 1.11649 1.76834 1.19522 0.90315 0.87953 0.91629 1.21107 0.93720 0.99046 1.11905 1.20867 0.98334 0.91548 0.95956 1.18429 0.92897 0.92366 1.14248 1.21638 0.98202 0.91671 0.94764 1.22985 1.00234 0.92485 1.08714 1.23170 0.99930 0.93987 0.87734 1.98719 1.93694 1.79239 1.45261 1.20803 0.92785 0.96859 0.96851 1.20162 0.99720 0.90229 1.11366 0.91781 0.85297 0.87190 0.87312 0.86145 0.88697 0.89173 0.86616 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.52 13.67 55.48 0.76 -23.76 15 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 15 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.39 -10.69 9.48 30.88 0.29 -10.39 15 8 H 0.09 2.35 5.19 -52.49 -0.27 2.08 15 9 O -0.17 -4.72 9.75 0.29 0.00 -4.71 15 10 C 0.16 3.81 6.65 -38.99 -0.26 3.55 15 11 C -0.24 -5.04 9.15 -39.45 -0.36 -5.40 15 12 C -0.05 -0.87 9.78 -39.23 -0.38 -1.25 15 13 C -0.18 -3.03 5.87 -104.98 -0.62 -3.65 15 14 C -0.04 -0.60 9.51 -37.60 -0.36 -0.95 15 15 C -0.23 -2.75 9.06 -36.20 -0.33 -3.07 15 16 C 0.01 0.14 7.10 36.01 0.26 0.39 15 17 Cl -0.20 -2.25 29.13 -51.86 -1.51 -3.76 15 18 C -0.05 -0.97 9.39 -39.22 -0.37 -1.34 15 19 C -0.20 -4.07 9.97 -39.46 -0.39 -4.46 15 20 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.13 2.70 5.62 -52.49 -0.29 2.40 15 22 H 0.11 1.63 8.06 -52.49 -0.42 1.20 15 23 H 0.11 1.23 7.87 -52.49 -0.41 0.82 15 24 H 0.12 1.53 6.03 -52.49 -0.32 1.21 15 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.09 0.75 7.81 -51.93 -0.41 0.34 15 27 H 0.12 1.74 6.16 -52.49 -0.32 1.42 15 28 H 0.12 2.38 8.06 -52.49 -0.42 1.96 15 LS Contribution 266.14 15.07 4.01 4.01 Total: -1.00 -29.08 266.14 -6.81 -35.89 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.43 Total: 3.05 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.62 Total: -25.62 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.76 Total: -23.76 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.00 Total: -4.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.51 Total: -3.76 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.08 -6.81 -35.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086210992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.604 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds