Wall clock time and date at job start Mon Mar 30 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48506 * 109.46824 * 269.99806 * 3 2 1 5 5 H 1.48505 * 109.47114 * 29.99427 * 3 2 1 6 6 H 1.48496 * 109.47446 * 149.99889 * 3 2 1 7 7 C 1.38650 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00236 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.35692 * 116.99780 * 185.05408 * 9 7 2 11 11 C 1.39036 * 119.92519 * 354.46029 * 10 9 7 12 12 C 1.37780 * 120.07031 * 179.74259 * 11 10 9 13 13 C 1.39635 * 119.92747 * 0.25228 * 12 11 10 14 14 C 1.47723 * 120.07505 * 179.97438 * 13 12 11 15 15 C 1.32647 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 15 14 13 17 17 Cl 1.80303 * 109.46848 * 124.99868 * 16 15 14 18 18 C 1.39643 * 119.85717 * 359.97438 * 13 12 11 19 19 C 1.37780 * 119.92438 * 0.02562 * 18 13 12 20 20 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.96095 * 0.02562 * 11 10 9 22 22 H 1.07994 * 120.03186 * 180.26993 * 12 11 10 23 23 H 1.08002 * 119.99591 * 359.97438 * 14 13 12 24 24 H 1.07997 * 119.99785 * 0.02562 * 15 14 13 25 25 H 1.09002 * 109.47298 * 244.99864 * 16 15 14 26 26 H 1.09006 * 109.47210 * 5.00411 * 16 15 14 27 27 H 1.07997 * 120.03933 * 179.97438 * 18 13 12 28 28 H 1.08002 * 119.96178 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0697 -3.5038 0.1086 11 6 3.4583 -3.4352 0.0945 12 6 4.2075 -4.5859 0.2083 13 6 3.5708 -5.8224 0.3325 14 6 4.3708 -7.0582 0.4541 15 6 3.7644 -8.2320 0.5725 16 6 4.5807 -9.4927 0.6960 17 17 4.0902 -10.3828 2.1853 18 6 2.1759 -5.8882 0.3415 19 6 1.4326 -4.7338 0.2273 20 1 -0.4850 0.8401 -0.0004 21 1 3.9501 -2.4784 -0.0011 22 1 5.2861 -4.5314 0.2017 23 1 5.4496 -7.0059 0.4466 24 1 2.6857 -8.2841 0.5796 25 1 4.4101 -10.1230 -0.1768 26 1 5.6384 -9.2362 0.7579 27 1 1.6804 -6.8430 0.4370 28 1 0.3537 -4.7839 0.2347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086210992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:10 Heat of formation + Delta-G solvation = -23.688322 kcal Electronic energy + Delta-G solvation = -13539.159118 eV Core-core repulsion = 10966.972360 eV Total energy + Delta-G solvation = -2572.186758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79906 -38.61731 -36.99811 -35.24156 -34.21318 -31.91796 -30.76061 -27.69047 -26.53855 -23.86916 -22.73001 -20.73174 -19.57794 -18.83212 -17.05218 -16.46645 -16.15567 -15.58528 -15.43878 -15.10251 -14.99000 -14.46402 -14.25050 -13.92941 -13.53514 -13.26868 -12.91563 -12.68713 -12.46247 -12.14460 -12.09743 -11.40633 -11.30564 -11.18157 -10.99473 -10.41878 -9.85904 -8.59763 -8.49736 -6.17029 0.10065 0.57857 1.24703 1.35220 1.45613 1.52987 1.98901 2.16478 2.87908 3.20602 3.45949 3.71949 3.95633 4.10433 4.22380 4.36686 4.50334 4.50959 4.64847 4.73664 4.99573 5.10266 5.22930 5.44471 5.50208 5.65504 5.69518 5.96816 6.00223 6.17249 6.94369 7.73561 8.72820 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.068134 B = 0.003986 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.856635 B = 7023.044918 C = 7267.311925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.118 3.882 11 C -0.245 4.245 12 C -0.052 4.052 13 C -0.151 4.151 14 C -0.068 4.068 15 C -0.194 4.194 16 C 0.013 3.987 17 Cl -0.208 7.208 18 C -0.058 4.058 19 C -0.207 4.207 20 H 0.273 0.727 21 H 0.124 0.876 22 H 0.150 0.850 23 H 0.141 0.859 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.382 -14.400 0.358 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.067 3.933 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.152 4.152 14 C -0.086 4.086 15 C -0.212 4.212 16 C -0.048 4.048 17 Cl -0.182 7.182 18 C -0.076 4.076 19 C -0.226 4.226 20 H 0.083 0.917 21 H 0.141 0.859 22 H 0.167 0.833 23 H 0.158 0.842 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.165 0.835 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.932 -14.294 0.451 18.001 hybrid contribution -0.302 1.023 0.029 1.067 sum 10.630 -13.271 0.479 17.010 Atomic orbital electron populations 1.70189 1.08080 1.28932 1.48416 1.26646 0.96883 1.02876 0.95712 0.84558 0.77811 0.74355 0.79309 1.18707 1.19647 1.17541 1.21873 0.92666 0.81309 1.53254 0.87786 1.83923 1.36158 1.12708 1.80614 1.20065 0.91732 0.87869 0.93618 1.21248 0.92939 1.00324 1.11915 1.21267 1.00187 0.90545 0.94941 1.18954 0.92867 0.93862 1.09477 1.21685 0.99491 0.90046 0.97370 1.23276 1.00467 0.93281 1.04206 1.23370 1.00702 0.92904 0.87862 1.98732 1.93872 1.79423 1.46183 1.21175 0.93499 0.96919 0.96004 1.20397 1.00041 0.90580 1.11619 0.91750 0.85879 0.83262 0.84181 0.86656 0.86260 0.86826 0.83539 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.05 13.67 21.61 0.30 -55.75 15 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 15 3 Si 1.02 42.23 29.55 68.60 2.03 44.26 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 15 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 7 C -0.42 -23.93 9.48 67.92 0.64 -23.29 15 8 H 0.10 5.46 5.19 -2.91 -0.02 5.44 15 9 O -0.23 -13.67 9.75 -21.87 -0.21 -13.88 15 10 C 0.12 5.85 6.65 22.65 0.15 6.00 15 11 C -0.25 -10.44 9.15 22.35 0.20 -10.24 15 12 C -0.05 -1.71 9.78 22.50 0.22 -1.49 15 13 C -0.15 -4.62 5.87 -20.09 -0.12 -4.74 15 14 C -0.07 -1.47 9.51 23.61 0.22 -1.24 15 15 C -0.19 -3.71 9.06 24.52 0.22 -3.49 15 16 C 0.01 0.19 7.10 71.24 0.51 0.69 15 17 Cl -0.21 -3.99 29.13 -2.72 -0.08 -4.07 15 18 C -0.06 -1.96 9.39 22.50 0.21 -1.75 15 19 C -0.21 -8.84 9.97 22.35 0.22 -8.61 15 20 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 21 H 0.12 5.28 5.62 -2.91 -0.02 5.26 15 22 H 0.15 3.76 8.06 -2.91 -0.02 3.73 15 23 H 0.14 2.27 7.87 -2.91 -0.02 2.24 15 24 H 0.12 2.37 6.03 -2.91 -0.02 2.35 15 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 15 26 H 0.11 1.16 7.81 -2.38 -0.02 1.14 15 27 H 0.15 3.96 6.16 -2.91 -0.02 3.94 15 28 H 0.11 4.83 8.06 -2.91 -0.02 4.80 15 Total: -1.00 -68.66 266.14 6.16 -62.50 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.18 Total: 15.95 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 2.95 Total: -49.01 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.30 Total: -55.75 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.21 Total: -13.88 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -3.99 SS G_CDS: -0.08 Total: -4.07 kcal Total: -68.66 6.16 -62.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086210992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.813 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds