Wall clock time and date at job start Mon Mar 30 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86794 * 120.00346 * 2 1 4 4 H 1.48501 * 109.47024 * 240.00011 * 3 2 1 5 5 H 1.48505 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47356 * 119.99870 * 3 2 1 7 7 C 1.38649 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.35650 * 117.00075 * 185.06264 * 9 7 2 11 11 C 1.38729 * 120.14222 * 354.39747 * 10 9 7 12 12 C 1.38119 * 120.06638 * 179.97438 * 11 10 9 13 13 C 1.38477 * 120.37028 * 359.97438 * 12 11 10 14 14 C 1.37955 * 120.29735 * 359.97438 * 13 12 11 15 15 C 1.39505 * 119.91965 * 0.02562 * 14 13 12 16 16 C 1.47676 * 120.18181 * 179.97438 * 15 14 13 17 17 C 1.32665 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00041 * 179.97438 * 17 16 15 19 19 Cl 1.80297 * 109.47214 * 125.00295 * 18 17 16 20 20 H 0.96995 * 119.99829 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.97286 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.81925 * 180.27394 * 12 11 10 23 23 H 1.07999 * 119.85781 * 180.02562 * 13 12 11 24 24 H 1.07996 * 120.04344 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.00239 * 179.97438 * 16 15 14 26 26 H 1.08005 * 120.00222 * 0.02562 * 17 16 15 27 27 H 1.09004 * 109.47150 * 245.00337 * 18 17 16 28 28 H 1.08995 * 109.47052 * 4.99977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0693 -3.5035 0.1077 11 6 3.4551 -3.4405 0.0942 12 6 4.2016 -4.5974 0.2040 13 6 3.5747 -5.8258 0.3286 14 6 2.1976 -5.9060 0.3448 15 6 1.4317 -4.7453 0.2348 16 6 -0.0429 -4.8244 0.2510 17 6 -0.6427 -6.0017 0.3699 18 6 -2.1475 -6.0825 0.3869 19 17 -2.7030 -7.2194 -0.8974 20 1 -0.4850 0.8400 -0.0004 21 1 3.9508 -2.4859 -0.0023 22 1 5.2802 -4.5432 0.1974 23 1 4.1665 -6.7252 0.4143 24 1 1.7130 -6.8663 0.4418 25 1 -0.6330 -3.9239 0.1660 26 1 -0.0526 -6.9023 0.4553 27 1 -2.4810 -6.4428 1.3602 28 1 -2.5665 -5.0933 0.2027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086211163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:13 Heat of formation + Delta-G solvation = -6.664735 kcal Electronic energy + Delta-G solvation = -13928.881002 eV Core-core repulsion = 11357.432442 eV Total energy + Delta-G solvation = -2571.448560 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19384 -36.66088 -35.88628 -34.17035 -32.41024 -30.13753 -29.04850 -25.96617 -25.33272 -22.30224 -21.07721 -19.02410 -18.03156 -17.12824 -15.35827 -14.80326 -14.60190 -14.08543 -13.92380 -13.73695 -13.63685 -13.35552 -12.51665 -12.40065 -11.78771 -11.55911 -11.46515 -10.98546 -10.85987 -10.63405 -10.46096 -10.25348 -10.19649 -9.59680 -9.45868 -8.93045 -7.87005 -7.11935 -6.56650 -4.14161 1.46299 2.29105 2.48737 3.07450 3.08586 3.11247 3.28559 3.87653 4.57487 4.98699 5.02111 5.10542 5.23513 5.45928 5.56920 5.66706 5.80995 5.94649 6.11998 6.14930 6.59357 6.76363 6.81820 6.93442 7.07520 7.25332 7.28726 7.43497 7.71762 7.88201 8.88797 9.55779 10.60602 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.006705 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.062824 B = 4175.275518 C = 5389.932528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.166 6.166 10 C 0.168 3.832 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.217 4.217 14 C -0.059 4.059 15 C -0.152 4.152 16 C -0.032 4.032 17 C -0.231 4.231 18 C 0.017 3.983 19 Cl -0.202 7.202 20 H 0.272 0.728 21 H 0.129 0.871 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -7.916 1.372 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.068 6.068 10 C 0.113 3.887 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.236 4.236 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.051 4.051 17 C -0.250 4.250 18 C -0.045 4.045 19 Cl -0.175 7.175 20 H 0.082 0.918 21 H 0.147 0.853 22 H 0.127 0.873 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.380 -7.752 1.254 7.862 hybrid contribution 0.599 0.802 -0.050 1.003 sum 0.979 -6.950 1.204 7.121 Atomic orbital electron populations 1.70011 1.05982 1.28068 1.45098 1.25299 0.95872 0.98886 0.96228 0.85761 0.78754 0.79568 0.79284 1.19405 1.20172 1.19407 1.21329 0.91917 0.80677 1.53176 0.88939 1.83906 1.34471 1.11425 1.77028 1.19427 0.90159 0.87443 0.91667 1.21140 0.93599 0.99189 1.11448 1.20865 0.98616 0.92370 0.96502 1.20555 0.94277 0.97055 1.11687 1.20876 0.93528 0.96363 0.96887 1.18059 0.92447 0.91011 1.13814 1.21712 0.93111 0.97574 0.92656 1.22886 0.93494 0.98478 1.10113 1.23179 0.94717 0.95144 0.91435 1.98701 1.91184 1.68008 1.59650 0.91766 0.85304 0.87318 0.87403 0.86569 0.85798 0.86584 0.88819 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.12 13.67 55.48 0.76 -23.36 15 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 15 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.40 -10.62 9.49 30.88 0.29 -10.33 15 8 H 0.09 2.30 5.21 -52.49 -0.27 2.02 15 9 O -0.17 -4.52 8.94 0.41 0.00 -4.52 15 10 C 0.17 3.96 6.66 -38.68 -0.26 3.70 15 11 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 15 12 C -0.07 -1.17 10.03 -39.54 -0.40 -1.57 15 13 C -0.22 -3.70 10.03 -39.60 -0.40 -4.09 15 14 C -0.06 -1.05 9.40 -39.21 -0.37 -1.41 15 15 C -0.15 -3.15 5.88 -104.85 -0.62 -3.77 15 16 C -0.03 -0.61 9.26 -37.62 -0.35 -0.96 15 17 C -0.23 -3.65 9.07 -36.20 -0.33 -3.98 15 18 C 0.02 0.23 7.10 36.01 0.26 0.49 15 19 Cl -0.20 -2.86 29.13 -51.86 -1.51 -4.37 15 20 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 21 H 0.13 2.69 5.64 -52.49 -0.30 2.40 15 22 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 23 H 0.11 1.52 8.06 -52.49 -0.42 1.10 15 24 H 0.12 1.76 6.17 -52.49 -0.32 1.44 15 25 H 0.12 2.59 7.45 -52.49 -0.39 2.20 15 26 H 0.12 1.71 6.04 -52.48 -0.32 1.40 15 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.09 1.27 7.81 -51.93 -0.41 0.87 15 LS Contribution 265.06 15.07 3.99 3.99 Total: -1.00 -28.39 265.06 -6.81 -35.20 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.41 Total: 4.48 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.62 Total: -26.22 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.76 Total: -23.36 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -1.51 Total: -4.37 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.39 -6.81 -35.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086211163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.537 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds