Wall clock time and date at job start Mon Mar 30 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86794 * 120.00346 * 2 1 4 4 H 1.48501 * 109.47024 * 240.00011 * 3 2 1 5 5 H 1.48505 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47356 * 119.99870 * 3 2 1 7 7 C 1.38649 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.35650 * 117.00075 * 185.06264 * 9 7 2 11 11 C 1.38729 * 120.14222 * 354.39747 * 10 9 7 12 12 C 1.38119 * 120.06638 * 179.97438 * 11 10 9 13 13 C 1.38477 * 120.37028 * 359.97438 * 12 11 10 14 14 C 1.37955 * 120.29735 * 359.97438 * 13 12 11 15 15 C 1.39505 * 119.91965 * 0.02562 * 14 13 12 16 16 C 1.47676 * 120.18181 * 179.97438 * 15 14 13 17 17 C 1.32665 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00041 * 179.97438 * 17 16 15 19 19 Cl 1.80297 * 109.47214 * 125.00295 * 18 17 16 20 20 H 0.96995 * 119.99829 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.97286 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.81925 * 180.27394 * 12 11 10 23 23 H 1.07999 * 119.85781 * 180.02562 * 13 12 11 24 24 H 1.07996 * 120.04344 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.00239 * 179.97438 * 16 15 14 26 26 H 1.08005 * 120.00222 * 0.02562 * 17 16 15 27 27 H 1.09004 * 109.47150 * 245.00337 * 18 17 16 28 28 H 1.08995 * 109.47052 * 4.99977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0693 -3.5035 0.1077 11 6 3.4551 -3.4405 0.0942 12 6 4.2016 -4.5974 0.2040 13 6 3.5747 -5.8258 0.3286 14 6 2.1976 -5.9060 0.3448 15 6 1.4317 -4.7453 0.2348 16 6 -0.0429 -4.8244 0.2510 17 6 -0.6427 -6.0017 0.3699 18 6 -2.1475 -6.0825 0.3869 19 17 -2.7030 -7.2194 -0.8974 20 1 -0.4850 0.8400 -0.0004 21 1 3.9508 -2.4859 -0.0023 22 1 5.2802 -4.5432 0.1974 23 1 4.1665 -6.7252 0.4143 24 1 1.7130 -6.8663 0.4418 25 1 -0.6330 -3.9239 0.1660 26 1 -0.0526 -6.9023 0.4553 27 1 -2.4810 -6.4428 1.3602 28 1 -2.5665 -5.0933 0.2027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086211163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:12 Heat of formation + Delta-G solvation = -22.265950 kcal Electronic energy + Delta-G solvation = -13929.557522 eV Core-core repulsion = 11357.432442 eV Total energy + Delta-G solvation = -2572.125079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83421 -38.30280 -37.10686 -35.55448 -34.31443 -31.55815 -30.62592 -27.58711 -26.97404 -23.83401 -22.61738 -20.51737 -19.74948 -18.83584 -16.90581 -16.41604 -16.21815 -15.60234 -15.36917 -15.14693 -15.10018 -14.83470 -14.12910 -13.71847 -13.56012 -13.17158 -12.91660 -12.58603 -12.39615 -12.19955 -11.95288 -11.49333 -11.43569 -11.15694 -11.00077 -10.80581 -9.38486 -8.71470 -8.48945 -6.15421 0.02055 0.72763 1.19474 1.34638 1.45093 1.50239 1.93012 2.16166 2.86878 3.23277 3.45409 3.67608 3.95907 4.21203 4.24239 4.31116 4.43371 4.57915 4.63577 4.72171 5.06189 5.09571 5.28670 5.42394 5.52439 5.73173 5.74217 5.88441 6.03463 6.22002 6.95781 7.74987 8.73175 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.006705 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.062824 B = 4175.275518 C = 5389.932528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.101 0.899 9 O -0.218 6.218 10 C 0.123 3.877 11 C -0.250 4.250 12 C -0.067 4.067 13 C -0.193 4.193 14 C -0.064 4.064 15 C -0.156 4.156 16 C -0.076 4.076 17 C -0.182 4.182 18 C 0.013 3.987 19 Cl -0.198 7.198 20 H 0.273 0.727 21 H 0.120 0.880 22 H 0.146 0.854 23 H 0.154 0.846 24 H 0.152 0.848 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -10.542 1.814 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.118 0.882 9 O -0.123 6.123 10 C 0.071 3.929 11 C -0.269 4.269 12 C -0.085 4.085 13 C -0.211 4.211 14 C -0.082 4.082 15 C -0.158 4.158 16 C -0.095 4.095 17 C -0.200 4.200 18 C -0.049 4.049 19 Cl -0.172 7.172 20 H 0.082 0.918 21 H 0.138 0.862 22 H 0.164 0.836 23 H 0.171 0.829 24 H 0.169 0.831 25 H 0.108 0.892 26 H 0.157 0.843 27 H 0.145 0.855 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.915 -10.436 1.696 10.745 hybrid contribution 0.149 1.175 -0.164 1.196 sum 2.064 -9.261 1.533 9.611 Atomic orbital electron populations 1.70159 1.07903 1.28902 1.48264 1.26521 0.96820 1.02545 0.95704 0.84686 0.77464 0.74455 0.79891 1.18265 1.19631 1.18199 1.21799 0.92576 0.81484 1.53501 0.88160 1.83888 1.35708 1.12312 1.80419 1.20057 0.91511 0.87649 0.93667 1.21293 0.93031 1.00437 1.12148 1.21286 1.00406 0.91509 0.95318 1.21151 0.94269 0.98194 1.07492 1.21305 0.94143 0.96500 0.96212 1.18507 0.93538 0.91134 1.12580 1.21490 0.92697 0.97780 0.97534 1.23196 0.94869 0.97590 1.04384 1.23304 0.93197 0.95424 0.92984 1.98707 1.91003 1.67727 1.59720 0.91789 0.86230 0.83632 0.82874 0.83081 0.89178 0.84314 0.85509 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.97 13.67 21.61 0.30 -54.67 15 2 C -0.02 -0.98 5.49 84.83 0.47 -0.51 15 3 Si 1.02 42.16 29.55 68.60 2.03 44.19 15 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 7 C -0.42 -23.92 9.49 67.92 0.64 -23.28 15 8 H 0.10 5.28 5.21 -2.91 -0.02 5.26 15 9 O -0.22 -12.78 8.94 -21.45 -0.19 -12.97 15 10 C 0.12 6.02 6.66 22.86 0.15 6.17 15 11 C -0.25 -10.71 9.16 22.36 0.20 -10.51 15 12 C -0.07 -2.23 10.03 22.30 0.22 -2.00 15 13 C -0.19 -5.70 10.03 22.26 0.22 -5.47 15 14 C -0.06 -2.08 9.40 22.51 0.21 -1.86 15 15 C -0.16 -6.51 5.88 -20.01 -0.12 -6.63 15 16 C -0.08 -2.98 9.26 23.60 0.22 -2.76 15 17 C -0.18 -5.38 9.07 24.52 0.22 -5.16 15 18 C 0.01 0.32 7.10 71.24 0.51 0.83 15 19 Cl -0.20 -5.14 29.13 -2.72 -0.08 -5.22 15 20 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 21 H 0.12 5.20 5.64 -2.91 -0.02 5.18 15 22 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 23 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 24 H 0.15 3.78 6.17 -2.91 -0.02 3.77 15 25 H 0.09 4.12 7.45 -2.91 -0.02 4.10 15 26 H 0.14 3.48 6.04 -2.91 -0.02 3.46 15 27 H 0.13 2.44 8.14 -2.38 -0.02 2.42 15 28 H 0.09 2.39 7.81 -2.39 -0.02 2.37 15 Total: -1.00 -67.17 265.06 6.18 -60.99 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.18 Total: 18.87 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 2.95 Total: -51.19 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.30 Total: -54.67 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.19 Total: -12.97 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: -5.14 SS G_CDS: -0.08 Total: -5.22 kcal Total: -67.17 6.18 -60.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086211163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.720 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds