Wall clock time and date at job start Mon Mar 30 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 120.00353 * 2 1 4 4 C 1.38235 * 120.00108 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00026 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99955 * 359.94983 * 4 3 2 7 7 C 1.38236 * 120.00271 * 0.02608 * 6 4 3 8 8 C 1.50694 * 120.00343 * 179.97438 * 7 6 4 9 9 S 1.81399 * 109.46814 * 90.00080 * 8 7 6 10 10 O 1.42099 * 109.47330 * 70.94675 * 9 8 7 11 11 C 1.76202 * 102.99895 * 180.02562 * 9 8 7 12 12 H 1.07998 * 120.00033 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99998 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99992 * 180.02562 * 13 11 9 15 15 Si 1.86802 * 119.99811 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47143 * 89.99543 * 15 13 11 17 17 H 1.48500 * 109.46822 * 209.99723 * 15 13 11 18 18 H 1.48497 * 109.46952 * 329.99395 * 15 13 11 19 19 C 1.38235 * 119.99484 * 0.25234 * 7 6 4 20 20 H 1.09003 * 109.46870 * 89.99819 * 1 2 3 21 21 H 1.09000 * 109.47298 * 210.00140 * 1 2 3 22 22 H 1.09006 * 109.47307 * 330.00563 * 1 2 3 23 23 H 1.07997 * 119.99602 * 359.97438 * 3 2 1 24 24 H 1.09008 * 109.46902 * 269.97379 * 5 4 3 25 25 H 1.09002 * 109.47301 * 29.97149 * 5 4 3 26 26 H 1.09001 * 109.47364 * 149.97623 * 5 4 3 27 27 H 1.08004 * 119.99823 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47164 * 330.00778 * 8 7 6 29 29 H 1.08995 * 109.47829 * 210.00096 * 8 7 6 30 30 H 0.97001 * 120.00105 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.00013 * 179.72217 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0002 0.0000 7 6 3.5805 -1.1973 0.0005 8 6 4.3339 -2.5024 0.0005 9 16 4.6368 -3.0257 1.7107 10 8 3.4131 -3.4383 2.3036 11 6 5.5127 -4.5416 1.5122 12 1 5.7285 -4.9149 0.5220 13 6 5.9234 -5.2508 2.6210 14 7 6.5776 -6.3820 2.4728 15 14 5.5507 -4.6048 4.3337 16 1 4.2399 -5.1345 4.7881 17 1 6.6147 -5.0455 5.2712 18 1 5.5013 -3.1210 4.3031 19 6 2.1982 -1.1972 -0.0048 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8901 0.5138 23 1 1.6582 2.1324 -0.0004 24 1 4.5158 2.8162 -1.0290 25 1 3.7450 3.2620 0.5123 26 1 5.2865 2.3720 0.5127 27 1 5.3517 -0.0002 0.0000 28 1 5.2862 -2.3722 -0.5136 29 1 3.7447 -3.2622 -0.5130 30 1 6.8663 -6.8812 3.2528 31 1 1.6581 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087197117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:39 Heat of formation + Delta-G solvation = -62.643670 kcal Electronic energy + Delta-G solvation = -14320.153505 eV Core-core repulsion = 11884.154317 eV Total energy + Delta-G solvation = -2435.999188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42752 -36.11420 -34.97767 -34.40036 -34.31924 -28.92556 -28.19999 -27.54802 -27.49527 -21.90192 -21.56276 -19.92141 -17.86294 -17.27236 -17.11876 -16.65666 -15.70254 -15.39387 -14.88644 -14.72619 -14.53953 -14.25084 -13.93251 -13.76517 -13.70613 -13.28541 -13.18251 -12.98046 -12.84892 -12.52393 -12.25062 -11.90761 -11.87400 -11.78659 -11.21325 -10.78999 -9.52143 -9.41319 -8.93889 -8.70850 -7.06673 0.36636 0.48566 1.08906 1.22594 1.33501 1.64993 2.05763 2.61728 2.73973 2.89903 3.56943 3.79712 3.93377 4.00237 4.28958 4.38270 4.47952 4.59414 4.73691 4.76508 4.78259 4.87825 5.00089 5.02051 5.13397 5.32531 5.43694 5.52823 5.66382 5.71659 5.77648 6.10172 6.19942 6.75866 8.40404 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.006752 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.943705 B = 4146.140202 C = 4370.825382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.080 4.080 5 C -0.110 4.110 6 C -0.132 4.132 7 C -0.062 4.062 8 C -0.403 4.403 9 S 1.339 4.661 10 O -0.966 6.966 11 C -0.846 4.846 12 H 0.061 0.939 13 C 0.079 3.921 14 N -0.889 5.889 15 Si 0.891 3.109 16 H -0.288 1.288 17 H -0.234 1.234 18 H -0.203 1.203 19 C -0.157 4.157 20 H 0.081 0.919 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.150 0.850 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.059 0.941 30 H 0.283 0.717 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 20.338 -3.245 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.166 4.166 6 C -0.151 4.151 7 C -0.064 4.064 8 C -0.538 4.538 9 S 1.544 4.456 10 O -0.961 6.961 11 C -0.986 4.986 12 H 0.079 0.921 13 C -0.132 4.132 14 N -0.523 5.523 15 Si 0.711 3.289 16 H -0.215 1.215 17 H -0.157 1.157 18 H -0.125 1.125 19 C -0.177 4.177 20 H 0.100 0.900 21 H 0.072 0.928 22 H 0.107 0.893 23 H 0.168 0.832 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.171 0.829 28 H 0.157 0.843 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.263 20.612 -2.339 20.999 hybrid contribution -1.263 -2.951 -0.852 3.321 sum -4.526 17.661 -3.191 18.509 Atomic orbital electron populations 1.20826 0.89759 1.03213 1.03059 1.20159 0.97349 0.92641 0.98838 1.21216 0.94049 0.97572 1.02256 1.20318 0.94013 0.96194 0.97454 1.20854 1.00276 0.92092 1.03400 1.21258 1.01378 0.90437 1.02024 1.19328 0.93285 0.93851 0.99913 1.26616 1.05948 0.99367 1.21864 1.68296 0.92022 1.00122 0.85170 1.92746 1.49201 1.84975 1.69165 1.27915 1.46405 1.25460 0.98829 0.92054 1.25568 0.90753 0.93389 1.03463 1.70081 1.34547 1.14145 1.33520 0.86435 0.78843 0.83791 0.79867 1.21467 1.15749 1.12495 1.21015 0.94399 0.97914 1.04364 0.90034 0.92850 0.89301 0.83245 0.89967 0.90175 0.90144 0.82886 0.84326 0.92179 0.90667 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 10.01 71.23 0.71 -1.82 16 2 C -0.09 -2.60 5.88 -19.87 -0.12 -2.72 16 3 C -0.13 -3.14 9.36 22.27 0.21 -2.93 16 4 C -0.08 -1.84 5.88 -19.87 -0.12 -1.96 16 5 C -0.11 -1.57 10.01 71.23 0.71 -0.86 16 6 C -0.13 -3.64 9.36 22.27 0.21 -3.43 16 7 C -0.06 -2.22 5.14 -19.87 -0.10 -2.32 16 8 C -0.40 -16.16 6.01 71.23 0.43 -15.73 16 9 S 1.34 63.35 11.52 -56.49 -0.65 62.70 16 10 O -0.97 -56.56 16.46 -148.98 -2.45 -59.02 16 11 C -0.85 -49.12 9.94 67.74 0.67 -48.44 16 12 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 13 C 0.08 4.62 5.47 84.66 0.46 5.08 16 14 N -0.89 -53.96 13.96 21.45 0.30 -53.66 16 15 Si 0.89 42.68 26.71 68.60 1.83 44.51 16 16 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 17 H -0.23 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.20 -8.28 6.72 99.48 0.67 -7.61 16 19 C -0.16 -5.78 9.36 22.27 0.21 -5.57 16 20 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 22 H 0.09 1.55 8.09 -2.38 -0.02 1.53 16 23 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 24 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.99 16 27 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 28 H 0.14 4.68 8.09 -2.39 -0.02 4.66 16 29 H 0.06 2.68 8.08 -2.39 -0.02 2.66 16 30 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.09 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -78.18 281.34 3.37 -74.80 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.06 Total: 11.36 kcal Atomic # 6 Polarization: -83.98 SS G_CDS: 3.28 Total: -80.70 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.30 Total: -53.66 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -2.45 Total: -59.02 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.83 Total: 44.51 kcal Atomic # 16 Polarization: 63.35 SS G_CDS: -0.65 Total: 62.70 kcal Total: -78.18 3.37 -74.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.161 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds