Wall clock time and date at job start Mon Mar 30 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 119.99929 * 2 1 4 4 C 1.38236 * 119.99898 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99987 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00197 * 359.95914 * 4 3 2 7 7 C 1.38242 * 119.99804 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.99854 * 179.97438 * 7 6 4 9 9 S 1.81402 * 109.46804 * 90.00091 * 8 7 6 10 10 O 1.42091 * 109.47120 * 289.05199 * 9 8 7 11 11 C 1.76199 * 102.99699 * 179.97438 * 9 8 7 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99836 * 179.72079 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28505 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27572 * 13 11 9 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38229 * 120.00068 * 180.23925 * 2 1 3 20 20 H 1.08992 * 109.47135 * 89.99598 * 1 2 3 21 21 H 1.08995 * 109.47134 * 210.00242 * 1 2 3 22 22 H 1.09002 * 109.46709 * 329.99999 * 1 2 3 23 23 H 1.08006 * 120.00080 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.47576 * 269.98365 * 5 4 3 25 25 H 1.09004 * 109.47015 * 29.98606 * 5 4 3 26 26 H 1.08999 * 109.47031 * 149.97515 * 5 4 3 27 27 H 1.08001 * 120.00089 * 179.97438 * 6 4 3 28 28 H 1.08995 * 109.47270 * 330.00022 * 8 7 6 29 29 H 1.09002 * 109.46715 * 210.00123 * 8 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.99853 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 0.0000 -0.0002 7 6 3.5805 -1.1972 0.0001 8 6 4.3341 -2.5023 -0.0001 9 16 4.6370 -3.0258 1.7101 10 8 5.6066 -2.1723 2.3020 11 6 5.5117 -4.5424 1.5112 12 1 5.7270 -4.9158 0.5210 13 6 5.9268 -5.2493 2.6199 14 7 5.6649 -4.7943 3.8258 15 14 6.8608 -6.8531 2.4091 16 1 7.0263 -7.1431 0.9621 17 1 8.1972 -6.7351 3.0459 18 1 6.1020 -7.9561 3.0517 19 6 2.1982 -1.1971 -0.0050 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1325 0.0004 24 1 4.5156 2.8166 -1.0289 25 1 3.7450 3.2621 0.5126 26 1 5.2865 2.3721 0.5128 27 1 5.3518 0.0000 -0.0011 28 1 5.2862 -2.3720 -0.5143 29 1 3.7447 -3.2619 -0.5137 30 1 5.9566 -5.2919 4.6057 31 1 1.6582 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087197118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:41 Heat of formation + Delta-G solvation = -46.750003 kcal Electronic energy + Delta-G solvation = -14251.178848 eV Core-core repulsion = 11815.868861 eV Total energy + Delta-G solvation = -2435.309987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.14000 -33.62593 -33.20786 -33.04069 -32.71372 -27.63294 -26.36199 -26.33204 -25.63250 -20.42169 -20.37355 -17.88965 -15.89144 -15.45569 -15.32042 -15.05467 -14.12407 -13.90229 -13.40562 -13.05343 -12.98300 -12.73985 -12.48968 -12.34604 -12.30509 -11.72141 -11.48636 -11.20272 -11.14066 -10.80587 -10.68116 -10.56543 -10.43037 -10.13418 -9.10150 -8.68963 -8.17031 -7.84358 -6.80779 -6.30982 -4.81178 1.76184 1.77452 3.09602 3.17976 3.23358 3.60075 4.12321 4.27987 4.85793 5.03786 5.10480 5.14521 5.40471 5.49070 5.55022 5.69922 5.71095 5.74381 5.78146 5.94522 6.00743 6.03421 6.07138 6.34057 6.43758 6.60511 6.72164 6.92922 6.95927 7.17172 7.46778 7.47021 8.19090 9.08434 10.46868 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.006082 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.512615 B = 4602.976929 C = 4927.860453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.025 4.025 8 C -0.449 4.449 9 S 1.351 4.649 10 O -0.897 6.897 11 C -0.827 4.827 12 H 0.080 0.920 13 C 0.119 3.881 14 N -0.855 5.855 15 Si 0.906 3.094 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.273 1.273 19 C -0.131 4.131 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.280 0.720 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 6.947 -6.383 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.160 4.160 4 C -0.082 4.082 5 C -0.169 4.169 6 C -0.145 4.145 7 C -0.026 4.026 8 C -0.577 4.577 9 S 1.548 4.452 10 O -0.892 6.892 11 C -0.968 4.968 12 H 0.098 0.902 13 C -0.094 4.094 14 N -0.488 5.488 15 Si 0.731 3.269 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.150 4.150 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.367 7.431 -5.399 13.851 hybrid contribution 2.709 -0.891 -1.279 3.126 sum -7.658 6.539 -6.678 12.083 Atomic orbital electron populations 1.20749 0.91549 1.02584 1.01820 1.19799 0.95629 0.93135 0.99853 1.20717 0.93310 0.97195 1.04771 1.19800 0.93816 0.94954 0.99641 1.20761 1.00090 0.94252 1.01761 1.20961 0.99807 0.91654 1.02101 1.19401 0.93383 0.93902 0.95950 1.27335 1.03033 0.98907 1.28386 1.69463 1.12207 0.83594 0.79909 1.92807 1.65518 1.66017 1.64819 1.27570 1.50437 1.21022 0.97746 0.90201 1.24775 0.92646 0.98068 0.93941 1.69909 1.42161 1.38366 0.98356 0.86356 0.79678 0.81755 0.79076 1.19119 1.20280 1.19782 1.20907 0.93312 0.97623 1.03203 0.91672 0.91367 0.91973 0.86809 0.91660 0.91842 0.91587 0.86628 0.90545 0.87696 0.90994 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.80 16 2 C -0.08 -1.21 5.88 -104.62 -0.62 -1.83 16 3 C -0.14 -2.07 9.36 -39.58 -0.37 -2.44 16 4 C -0.08 -1.33 5.88 -104.62 -0.62 -1.94 16 5 C -0.11 -1.45 10.01 36.01 0.36 -1.09 16 6 C -0.13 -2.41 9.36 -39.58 -0.37 -2.78 16 7 C -0.03 -0.48 5.14 -104.62 -0.54 -1.02 16 8 C -0.45 -9.25 6.01 36.01 0.22 -9.03 16 9 S 1.35 33.59 12.96 -107.50 -1.39 32.19 16 10 O -0.90 -27.84 17.81 -35.23 -0.63 -28.46 16 11 C -0.83 -22.76 9.39 30.60 0.29 -22.47 16 12 H 0.08 2.13 7.81 -52.49 -0.41 1.72 16 13 C 0.12 3.30 5.46 -17.82 -0.10 3.20 16 14 N -0.85 -24.52 13.14 55.43 0.73 -23.80 16 15 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 C -0.13 -2.12 9.36 -39.59 -0.37 -2.49 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 22 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 23 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 29 H 0.10 1.87 8.08 -51.92 -0.42 1.46 16 30 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -34.66 285.72 -7.94 -42.59 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.18 Total: 0.08 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: -1.75 Total: -42.69 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.73 Total: -23.80 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.63 Total: -28.46 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 33.59 SS G_CDS: -1.39 Total: 32.19 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.66 -7.94 -42.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds