Wall clock time and date at job start Mon Mar 30 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 119.99929 * 2 1 4 4 C 1.38236 * 119.99898 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99987 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00197 * 359.95914 * 4 3 2 7 7 C 1.38242 * 119.99804 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.99854 * 179.97438 * 7 6 4 9 9 S 1.81402 * 109.46804 * 90.00091 * 8 7 6 10 10 O 1.42091 * 109.47120 * 289.05199 * 9 8 7 11 11 C 1.76199 * 102.99699 * 179.97438 * 9 8 7 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99836 * 179.72079 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28505 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27572 * 13 11 9 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.38229 * 120.00068 * 180.23925 * 2 1 3 20 20 H 1.08992 * 109.47135 * 89.99598 * 1 2 3 21 21 H 1.08995 * 109.47134 * 210.00242 * 1 2 3 22 22 H 1.09002 * 109.46709 * 329.99999 * 1 2 3 23 23 H 1.08006 * 120.00080 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.47576 * 269.98365 * 5 4 3 25 25 H 1.09004 * 109.47015 * 29.98606 * 5 4 3 26 26 H 1.08999 * 109.47031 * 149.97515 * 5 4 3 27 27 H 1.08001 * 120.00089 * 179.97438 * 6 4 3 28 28 H 1.08995 * 109.47270 * 330.00022 * 8 7 6 29 29 H 1.09002 * 109.46715 * 210.00123 * 8 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.99853 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 0.0000 -0.0002 7 6 3.5805 -1.1972 0.0001 8 6 4.3341 -2.5023 -0.0001 9 16 4.6370 -3.0258 1.7101 10 8 5.6066 -2.1723 2.3020 11 6 5.5117 -4.5424 1.5112 12 1 5.7270 -4.9158 0.5210 13 6 5.9268 -5.2493 2.6199 14 7 5.6649 -4.7943 3.8258 15 14 6.8608 -6.8531 2.4091 16 1 7.0263 -7.1431 0.9621 17 1 8.1972 -6.7351 3.0459 18 1 6.1020 -7.9561 3.0517 19 6 2.1982 -1.1971 -0.0050 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1325 0.0004 24 1 4.5156 2.8166 -1.0289 25 1 3.7450 3.2621 0.5126 26 1 5.2865 2.3721 0.5128 27 1 5.3518 0.0000 -0.0011 28 1 5.2862 -2.3720 -0.5143 29 1 3.7447 -3.2619 -0.5137 30 1 5.9566 -5.2919 4.6057 31 1 1.6582 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087197118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:41 Heat of formation + Delta-G solvation = -69.817935 kcal Electronic energy + Delta-G solvation = -14252.179149 eV Core-core repulsion = 11815.868861 eV Total energy + Delta-G solvation = -2436.310287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39302 -35.83372 -34.94211 -34.34182 -34.27090 -28.88274 -28.01676 -27.48411 -27.40419 -21.82732 -21.54666 -19.90613 -17.53385 -17.18263 -17.00953 -16.61164 -15.60493 -15.44028 -14.86471 -14.61645 -14.30530 -13.92955 -13.88951 -13.71752 -13.47050 -13.27867 -13.05240 -12.94494 -12.73186 -12.45641 -12.30029 -12.04306 -11.85120 -11.76775 -11.12136 -10.59322 -9.47662 -9.39457 -8.79220 -8.38695 -6.97886 0.43373 0.50579 1.28030 1.32339 1.46057 1.78205 2.25427 2.75006 2.93749 3.27330 3.80385 3.89439 3.98981 4.06359 4.31061 4.48284 4.50428 4.61803 4.76018 4.77384 4.80304 4.92120 5.00264 5.02989 5.14938 5.34832 5.36707 5.44330 5.68550 5.73951 5.81215 6.05515 6.22846 6.95688 8.41215 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.006082 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.512615 B = 4602.976929 C = 4927.860453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.111 4.111 6 C -0.162 4.162 7 C -0.056 4.056 8 C -0.426 4.426 9 S 1.369 4.631 10 O -0.970 6.970 11 C -0.856 4.856 12 H 0.080 0.920 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.974 3.026 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.246 1.246 19 C -0.136 4.136 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.150 0.850 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.135 0.865 30 H 0.287 0.713 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 7.058 -7.363 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.156 4.156 4 C -0.090 4.090 5 C -0.168 4.168 6 C -0.182 4.182 7 C -0.057 4.057 8 C -0.559 4.559 9 S 1.572 4.428 10 O -0.965 6.965 11 C -0.996 4.996 12 H 0.099 0.901 13 C -0.146 4.146 14 N -0.523 5.523 15 Si 0.795 3.205 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.170 1.170 19 C -0.155 4.155 20 H 0.102 0.898 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.168 0.832 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.717 7.527 -6.339 16.080 hybrid contribution 3.321 -0.794 -1.112 3.591 sum -9.396 6.734 -7.451 13.753 Atomic orbital electron populations 1.20845 0.88195 1.04084 1.03404 1.20324 0.97992 0.92253 0.97407 1.21194 0.92602 0.98979 1.02796 1.20160 0.95058 0.94955 0.98808 1.20820 0.99505 0.93383 1.03068 1.20991 0.98751 0.93532 1.04884 1.19389 0.94858 0.92617 0.98877 1.26969 1.03020 1.01329 1.24535 1.68279 1.10815 0.81912 0.81819 1.92707 1.67058 1.67770 1.68969 1.27903 1.51343 1.22271 0.98068 0.90144 1.25791 0.93440 1.01871 0.93523 1.69991 1.42997 1.40061 0.99273 0.85333 0.78073 0.77775 0.79326 1.18627 1.20573 1.16977 1.21228 0.91982 0.99797 1.02452 0.89845 0.90284 0.90207 0.83246 0.89906 0.89315 0.93000 0.89608 0.92787 0.84663 0.90287 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 2 C -0.08 -2.04 5.88 -19.87 -0.12 -2.16 16 3 C -0.14 -3.60 9.36 22.27 0.21 -3.39 16 4 C -0.09 -2.83 5.88 -19.87 -0.12 -2.95 16 5 C -0.11 -2.76 10.01 71.24 0.71 -2.04 16 6 C -0.16 -6.44 9.36 22.27 0.21 -6.23 16 7 C -0.06 -2.16 5.14 -19.86 -0.10 -2.27 16 8 C -0.43 -18.00 6.01 71.24 0.43 -17.57 16 9 S 1.37 70.71 12.96 -56.49 -0.73 69.98 16 10 O -0.97 -63.54 17.81 -148.98 -2.65 -66.19 16 11 C -0.86 -48.16 9.39 67.74 0.64 -47.53 16 12 H 0.08 4.35 7.81 -2.91 -0.02 4.33 16 13 C 0.06 3.57 5.46 84.66 0.46 4.03 16 14 N -0.89 -52.07 13.14 21.45 0.28 -51.79 16 15 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 19 C -0.14 -4.12 9.36 22.27 0.21 -3.92 16 20 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 22 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 23 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 1.73 8.09 -2.38 -0.02 1.71 16 26 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 27 H 0.09 3.77 8.06 -2.91 -0.02 3.75 16 28 H 0.05 2.48 8.09 -2.39 -0.02 2.47 16 29 H 0.14 4.76 8.08 -2.39 -0.02 4.74 16 30 H 0.29 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -78.28 285.72 3.27 -75.02 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.10 Total: 13.46 kcal Atomic # 6 Polarization: -88.35 SS G_CDS: 3.24 Total: -85.10 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.28 Total: -51.79 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -2.65 Total: -66.19 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 70.71 SS G_CDS: -0.73 Total: 69.98 kcal Total: -78.28 3.27 -75.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.198 kcal (2) G-P(sol) polarization free energy of solvation -78.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds