Wall clock time and date at job start Mon Mar 30 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48501 * 109.46800 * 269.99567 * 3 2 1 5 5 H 1.48495 * 109.47052 * 29.99633 * 3 2 1 6 6 H 1.48498 * 109.47324 * 149.99920 * 3 2 1 7 7 C 1.39887 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 197.88642 * 7 2 1 9 9 C 1.41214 * 119.99940 * 17.88854 * 7 2 1 10 10 C 1.40844 * 120.25206 * 24.37537 * 9 7 2 11 11 C 1.36313 * 119.69298 * 180.18666 * 10 9 7 12 12 Cl 1.73602 * 119.73611 * 179.97438 * 11 10 9 13 13 C 1.39893 * 120.52546 * 0.02562 * 11 10 9 14 14 C 1.38994 * 120.06322 * 359.77234 * 13 11 10 15 15 C 1.36840 * 120.06887 * 0.27404 * 14 13 11 16 16 C 1.50821 * 121.35210 * 180.29028 * 14 13 11 17 17 C 1.53057 * 109.67448 * 342.15914 * 16 14 13 18 18 C 1.53402 * 108.29047 * 48.24524 * 17 16 14 19 19 O 1.35793 * 118.25825 * 179.52164 * 13 11 10 20 20 H 0.96994 * 120.00317 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.15641 * 0.17188 * 10 9 7 22 22 H 1.07998 * 119.92121 * 179.88142 * 15 14 13 23 23 H 1.09004 * 109.43553 * 222.09887 * 16 14 13 24 24 H 1.09000 * 109.43626 * 102.23036 * 16 14 13 25 25 H 1.08997 * 109.70481 * 288.54305 * 17 16 14 26 26 H 1.09001 * 109.72954 * 167.95739 * 17 16 14 27 27 H 1.09004 * 109.68135 * 54.84514 * 18 17 16 28 28 H 1.08995 * 109.68201 * 175.35342 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0491 -1.2339 0.2878 9 6 1.3535 -2.4050 -0.3746 10 6 0.2214 -2.3605 -1.2114 11 6 -0.4041 -3.5193 -1.5633 12 17 -1.7999 -3.4657 -2.5941 13 6 0.0690 -4.7514 -1.0995 14 6 1.1882 -4.8025 -0.2768 15 6 1.8260 -3.6473 0.0856 16 6 1.7269 -6.1151 0.2346 17 6 0.6562 -7.2001 0.0973 18 6 0.0762 -7.1275 -1.3209 19 8 -0.5952 -5.8761 -1.4706 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1494 -1.4126 -1.5724 22 1 2.6942 -3.6897 0.7265 23 1 2.0040 -6.0095 1.2835 24 1 2.6057 -6.3971 -0.3454 25 1 -0.1353 -7.0298 0.8271 26 1 1.1028 -8.1807 0.2618 27 1 0.8820 -7.2013 -2.0513 28 1 -0.6307 -7.9435 -1.4707 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095938928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:49 Heat of formation + Delta-G solvation = -43.019855 kcal Electronic energy + Delta-G solvation = -14594.724909 eV Core-core repulsion = 12021.699872 eV Total energy + Delta-G solvation = -2573.025036 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47201 -36.65339 -35.35608 -33.74492 -33.04724 -29.66936 -29.17874 -25.87357 -24.36347 -22.49095 -20.98944 -19.43122 -17.22199 -16.70626 -15.65001 -15.24827 -14.73332 -13.99455 -13.72391 -13.16304 -13.03341 -12.64757 -12.58424 -12.02652 -11.57155 -11.38596 -11.22465 -11.09088 -10.76903 -10.35299 -10.26439 -10.19434 -9.83124 -9.63653 -9.49973 -9.02002 -7.46241 -7.10659 -6.81824 -4.37978 2.60028 2.68545 3.04775 3.08061 3.10670 3.37276 3.88577 4.26629 4.44925 5.18708 5.21436 5.31178 5.51214 5.71833 5.89061 5.96976 6.07157 6.17149 6.45245 6.49059 6.86950 6.88893 7.04553 7.21622 7.28969 7.62194 7.77275 8.01269 8.34119 8.49022 8.76356 8.80340 10.11672 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.008504 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.771655 B = 3291.851354 C = 4100.687114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.132 4.132 11 C -0.019 4.019 12 Cl -0.110 7.110 13 C 0.002 3.998 14 C -0.114 4.114 15 C -0.198 4.198 16 C -0.070 4.070 17 C -0.156 4.156 18 C 0.067 3.933 19 O -0.317 6.317 20 H 0.283 0.717 21 H 0.136 0.864 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -6.667 -0.848 6.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.152 4.152 11 C -0.046 4.046 12 Cl -0.082 7.082 13 C -0.043 4.043 14 C -0.115 4.115 15 C -0.218 4.218 16 C -0.107 4.107 17 C -0.194 4.194 18 C -0.009 4.009 19 O -0.233 6.233 20 H 0.094 0.906 21 H 0.154 0.846 22 H 0.119 0.881 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.829 -6.506 -0.991 6.633 hybrid contribution 0.420 0.705 0.113 0.829 sum 1.249 -5.800 -0.878 5.998 Atomic orbital electron populations 1.69817 1.07558 1.29578 1.34622 1.25927 0.94755 1.01445 0.92214 0.86276 0.80423 0.80446 0.79408 1.19182 1.20263 1.18591 1.19460 0.98233 0.90948 1.40073 0.90070 1.17413 0.91003 0.92417 0.89439 1.20941 0.98537 0.95556 1.00204 1.19995 0.91986 0.92972 0.99612 1.98250 1.43302 1.98889 1.67729 1.17903 0.97534 0.84344 1.04473 1.18991 0.97019 0.95130 1.00327 1.20572 1.03417 0.91704 1.06120 1.20373 0.97194 0.92210 1.00938 1.22188 0.99735 0.99076 0.98366 1.22643 0.96868 0.85661 0.95767 1.85914 1.41820 1.12520 1.83009 0.90569 0.84609 0.88137 0.91095 0.91691 0.90972 0.91194 0.93238 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.11 10.95 55.54 0.61 -19.50 15 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 15 3 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -0.46 -11.74 9.04 -37.84 -0.34 -12.08 15 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 15 9 C 0.10 2.60 5.57 -106.87 -0.60 2.01 15 10 C -0.13 -3.43 8.39 -39.29 -0.33 -3.76 15 11 C -0.02 -0.46 6.30 -39.66 -0.25 -0.71 15 12 Cl -0.11 -2.42 28.37 -51.86 -1.47 -3.89 15 13 C 0.00 0.04 6.51 -38.68 -0.25 -0.21 15 14 C -0.11 -2.49 5.72 -104.79 -0.60 -3.09 15 15 C -0.20 -4.69 9.34 -39.17 -0.37 -5.05 15 16 C -0.07 -1.19 5.84 -27.79 -0.16 -1.35 15 17 C -0.16 -2.31 6.19 -26.49 -0.16 -2.47 15 18 C 0.07 1.06 7.02 37.37 0.26 1.32 15 19 O -0.32 -6.65 9.62 -19.09 -0.18 -6.83 15 20 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 21 H 0.14 3.64 6.16 -52.49 -0.32 3.32 15 22 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -27.26 254.19 -7.97 -35.23 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.83 Total: 1.63 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.89 Total: -23.66 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.61 Total: -19.50 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.18 Total: -6.83 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -1.47 Total: -3.89 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.26 -7.97 -35.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095938928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.790 kcal (2) G-P(sol) polarization free energy of solvation -27.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds