Wall clock time and date at job start Mon Mar 30 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47140 * 269.99677 * 3 2 1 5 5 H 1.48501 * 109.47009 * 30.00329 * 3 2 1 6 6 H 1.48503 * 109.46840 * 149.99951 * 3 2 1 7 7 C 1.37876 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00492 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99544 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46769 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47082 * 304.99420 * 10 9 7 12 12 C 1.50697 * 109.47511 * 65.00166 * 10 9 7 13 13 O 1.20824 * 120.00163 * 119.99462 * 12 10 9 14 14 O 1.34233 * 119.99589 * 300.00106 * 12 10 9 15 15 C 1.50702 * 109.46955 * 184.99979 * 10 9 7 16 16 C 1.38218 * 120.01214 * 300.02269 * 15 10 9 17 17 C 1.38225 * 120.02313 * 179.97438 * 16 15 10 18 18 C 1.38270 * 120.05340 * 359.97438 * 17 16 15 19 19 C 1.38175 * 120.02272 * 359.97438 * 18 17 16 20 20 C 1.38436 * 120.01380 * 119.99829 * 15 10 9 21 21 F 1.35106 * 120.02572 * 0.02562 * 20 15 10 22 22 H 0.96995 * 120.00004 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.46987 * 60.00352 * 9 7 2 24 24 H 1.08999 * 109.46921 * 299.99752 * 9 7 2 25 25 H 0.96705 * 116.99555 * 179.97438 * 14 12 10 26 26 H 1.08000 * 119.98639 * 359.97438 * 16 15 10 27 27 H 1.08003 * 119.97189 * 180.02562 * 17 16 15 28 28 H 1.07999 * 119.98207 * 180.27551 * 18 17 16 29 29 H 1.08007 * 120.00907 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5866 -3.1758 0.8426 12 6 3.6234 -3.3101 -1.2870 13 8 4.4721 -3.7467 -2.0279 14 8 2.3258 -3.4248 -1.6111 15 6 5.5234 -2.6384 0.1254 16 6 6.2972 -2.0104 -0.8323 17 6 7.6747 -2.0115 -0.7181 18 6 8.2802 -2.6402 0.3542 19 6 7.5086 -3.2678 1.3134 20 6 6.1285 -3.2687 1.1992 21 9 5.3731 -3.8830 2.1359 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6804 -0.8889 25 1 2.1195 -3.8642 -2.4475 26 1 5.8253 -1.5186 -1.6701 27 1 8.2786 -1.5201 -1.4667 28 1 9.3564 -2.6365 0.4447 29 1 7.9818 -3.7592 2.1507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:35 Heat of formation + Delta-G solvation = -138.598051 kcal Electronic energy + Delta-G solvation = -16777.189411 eV Core-core repulsion = 13771.683418 eV Total energy + Delta-G solvation = -3005.505993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.92182 -41.50938 -39.74043 -36.99276 -36.14993 -34.16815 -31.48245 -31.02539 -27.90611 -24.22781 -24.08363 -23.25071 -21.19571 -19.39252 -18.68322 -18.43785 -17.80751 -17.09668 -16.58010 -16.52733 -16.38044 -16.00467 -15.10456 -14.76042 -14.51341 -14.36012 -14.08651 -13.74392 -13.23689 -13.18333 -12.62508 -12.52659 -12.38222 -12.29759 -11.87629 -11.65886 -11.34676 -11.33637 -10.72691 -9.87560 -9.60933 -8.22462 -6.25668 0.18147 0.29986 1.24980 1.36266 1.38942 1.48563 2.25766 2.38742 2.76585 3.10812 3.30991 3.51557 3.79885 4.06059 4.23303 4.37498 4.42613 4.45746 4.50627 4.95189 5.04056 5.12376 5.13918 5.26074 5.44258 5.49459 5.58962 5.65454 5.98216 6.32875 6.85598 7.14467 7.36376 8.93296 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.008774 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.309045 B = 3190.576142 C = 3532.632075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.010 3.990 10 C -0.034 4.034 11 H 0.103 0.897 12 C 0.502 3.498 13 O -0.545 6.545 14 O -0.492 6.492 15 C -0.123 4.123 16 C -0.080 4.080 17 C -0.127 4.127 18 C -0.083 4.083 19 C -0.153 4.153 20 C 0.079 3.921 21 F -0.150 7.150 22 H 0.264 0.736 23 H 0.036 0.964 24 H 0.024 0.976 25 H 0.413 0.587 26 H 0.119 0.881 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.790 -4.034 -0.276 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.028 4.028 10 C -0.053 4.053 11 H 0.121 0.879 12 C 0.347 3.653 13 O -0.437 6.437 14 O -0.302 6.302 15 C -0.124 4.124 16 C -0.098 4.098 17 C -0.145 4.145 18 C -0.100 4.100 19 C -0.172 4.172 20 C 0.060 3.940 21 F -0.128 7.128 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.273 0.727 26 H 0.137 0.863 27 H 0.177 0.823 28 H 0.191 0.809 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 16.908 -3.872 -0.061 17.345 hybrid contribution -0.952 0.264 -0.424 1.075 sum 15.956 -3.608 -0.485 16.366 Atomic orbital electron populations 1.70040 1.08005 1.27800 1.52747 1.25793 0.95453 1.02658 0.94554 0.85927 0.79822 0.79483 0.79126 1.19348 1.21073 1.17070 1.21397 0.90436 0.94265 1.49543 0.92182 1.19479 0.95582 0.89916 0.97806 1.19809 0.92076 0.99502 0.93899 0.87943 1.23164 0.80101 0.74567 0.87511 1.90611 1.52259 1.47956 1.52916 1.84876 1.27034 1.73318 1.44991 1.19602 0.94029 1.01932 0.96876 1.21000 0.95000 0.96863 0.96909 1.21554 0.93323 0.99982 0.99619 1.21466 1.01770 0.94668 0.92120 1.21432 0.90075 1.03006 1.02669 1.17860 0.90390 0.97709 0.88067 1.91445 1.76728 1.80957 1.63695 0.92659 0.94553 0.95728 0.72704 0.86262 0.82320 0.80861 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 13.96 21.45 0.30 -57.87 15 2 C 0.01 0.71 5.47 84.65 0.46 1.18 15 3 Si 0.93 43.19 27.47 68.60 1.88 45.08 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.25 -10.64 6.54 99.48 0.65 -9.99 15 7 C -0.52 -28.81 8.61 25.60 0.22 -28.59 15 8 H 0.06 3.65 6.61 -2.91 -0.02 3.63 15 9 C 0.01 0.44 3.25 29.85 0.10 0.54 15 10 C -0.03 -1.39 2.44 -12.28 -0.03 -1.42 15 11 H 0.10 4.37 7.13 -2.39 -0.02 4.36 15 12 C 0.50 20.58 7.48 71.23 0.53 21.11 15 13 O -0.55 -22.53 15.87 21.97 0.35 -22.18 15 14 O -0.49 -19.61 11.02 -51.45 -0.57 -20.18 15 15 C -0.12 -4.40 4.40 -19.82 -0.09 -4.49 15 16 C -0.08 -2.50 7.98 22.26 0.18 -2.32 15 17 C -0.13 -2.89 10.04 22.27 0.22 -2.66 15 18 C -0.08 -1.59 10.04 22.26 0.22 -1.36 15 19 C -0.15 -3.59 10.03 22.31 0.22 -3.37 15 20 C 0.08 2.53 7.25 22.37 0.16 2.69 15 21 F -0.15 -5.14 16.20 44.97 0.73 -4.41 15 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 15 23 H 0.04 1.67 7.20 -2.39 -0.02 1.65 15 24 H 0.02 1.10 7.00 -2.39 -0.02 1.09 15 25 H 0.41 11.79 9.10 -74.05 -0.67 11.12 15 26 H 0.12 3.88 7.58 -2.91 -0.02 3.86 15 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 15 28 H 0.17 1.81 8.06 -2.91 -0.02 1.79 15 29 H 0.16 2.78 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -69.98 259.35 5.36 -64.62 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.46 Total: 13.63 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 2.21 Total: -18.69 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.22 Total: -42.35 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.73 Total: -4.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Total: -69.98 5.36 -64.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.976 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds