Wall clock time and date at job start Mon Mar 30 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47124 * 305.00081 * 10 9 7 12 12 C 1.50699 * 109.46955 * 65.00198 * 10 9 7 13 13 O 1.20822 * 120.00018 * 359.97438 * 12 10 9 14 14 O 1.34229 * 120.00115 * 179.97438 * 12 10 9 15 15 C 1.50700 * 109.47200 * 185.00128 * 10 9 7 16 16 C 1.38245 * 119.97026 * 299.72688 * 15 10 9 17 17 C 1.38205 * 120.02225 * 179.76891 * 16 15 10 18 18 C 1.38457 * 119.97369 * 0.50381 * 17 16 15 19 19 F 1.35094 * 120.02831 * 179.76967 * 18 17 16 20 20 C 1.38465 * 119.94821 * 359.74857 * 18 17 16 21 21 C 1.38195 * 119.97220 * 359.97438 * 20 18 17 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 0.96699 * 117.00343 * 179.97438 * 14 12 10 26 26 H 1.07995 * 119.99134 * 0.02562 * 16 15 10 27 27 H 1.07995 * 120.01052 * 180.25611 * 17 16 15 28 28 H 1.07997 * 120.00899 * 179.97438 * 20 18 17 29 29 H 1.08001 * 119.98582 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 1 3.5831 -3.1733 0.8599 12 6 3.6280 -3.3141 -1.2691 13 8 3.0036 -2.7057 -2.1056 14 8 3.9714 -4.5934 -1.4866 15 6 5.5227 -2.6383 0.1485 16 6 6.2998 -2.0181 -0.8121 17 6 7.6766 -2.0148 -0.6913 18 6 8.2779 -2.6419 0.3868 19 9 9.6238 -2.6433 0.5035 20 6 7.4987 -3.2672 1.3454 21 6 6.1220 -3.2643 1.2255 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 3.6965 -4.9850 -2.3269 26 1 5.8308 -1.5325 -1.6550 27 1 8.2833 -1.5267 -1.4396 28 1 7.9668 -3.7570 2.1865 29 1 5.5140 -3.7516 1.9734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:40 Heat of formation + Delta-G solvation = -119.320747 kcal Electronic energy + Delta-G solvation = -16449.085729 eV Core-core repulsion = 13444.415663 eV Total energy + Delta-G solvation = -3004.670066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.85166 -40.05908 -38.64968 -35.63996 -34.07894 -32.17703 -31.08294 -29.18551 -26.14629 -23.06497 -22.60652 -21.92042 -19.53549 -17.74002 -17.45666 -17.00744 -16.43610 -15.81470 -15.54772 -15.28404 -14.58105 -14.18834 -13.74690 -13.47657 -13.22212 -12.99737 -12.54534 -12.25921 -11.88983 -11.68099 -11.26296 -10.95927 -10.83656 -10.40368 -10.22521 -9.88915 -9.78011 -9.26861 -9.03535 -8.52307 -8.40700 -6.02693 -3.99907 1.19714 1.30407 2.91236 3.32340 3.39011 3.40108 3.51007 3.81164 4.30685 4.45495 4.78918 4.89416 4.95577 5.31640 5.37052 5.38411 5.73301 5.80051 6.00293 6.04458 6.16396 6.27963 6.36391 6.62798 6.92519 6.97542 7.09682 7.16693 7.70157 8.47212 8.56985 8.97866 9.57658 11.11084 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007684 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.504421 B = 3642.980477 C = 4259.507067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.070 0.930 9 C 0.004 3.996 10 C -0.025 4.025 11 H 0.112 0.888 12 C 0.478 3.522 13 O -0.476 6.476 14 O -0.529 6.529 15 C -0.073 4.073 16 C -0.084 4.084 17 C -0.151 4.151 18 C 0.086 3.914 19 F -0.146 7.146 20 C -0.153 4.153 21 C -0.079 4.079 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.034 0.966 25 H 0.399 0.601 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.493 -6.926 0.672 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.089 0.911 9 C -0.034 4.034 10 C -0.044 4.044 11 H 0.130 0.870 12 C 0.318 3.682 13 O -0.360 6.360 14 O -0.341 6.341 15 C -0.073 4.073 16 C -0.102 4.102 17 C -0.170 4.170 18 C 0.067 3.933 19 F -0.124 7.124 20 C -0.172 4.172 21 C -0.097 4.097 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.256 0.744 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.320 -6.435 0.811 15.720 hybrid contribution 0.342 0.668 -0.599 0.960 sum 14.662 -5.766 0.212 15.756 Atomic orbital electron populations 1.69898 1.06243 1.26804 1.51120 1.24905 0.94688 0.98905 0.94574 0.86853 0.80333 0.83919 0.78619 1.20204 1.21337 1.18980 1.20867 0.88406 0.94613 1.50684 0.91150 1.19630 0.98118 0.87911 0.97701 1.20147 0.90389 1.00388 0.93501 0.87031 1.23360 0.76342 0.79075 0.89374 1.90770 1.34951 1.64926 1.45303 1.84577 1.75513 1.29416 1.44576 1.19860 0.95067 0.97358 0.95039 1.21002 0.92475 0.97594 0.99096 1.21075 0.95538 1.02107 0.98265 1.17701 0.76742 1.01643 0.97215 1.91468 1.29837 1.95056 1.96065 1.21077 0.94194 1.02323 0.99567 1.20962 0.93523 0.97645 0.97550 0.92737 0.95684 0.94788 0.74418 0.84890 0.84910 0.84841 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 15 7 C -0.51 -14.18 8.30 -34.44 -0.29 -14.47 15 8 H 0.07 2.13 7.85 -52.49 -0.41 1.72 15 9 C 0.00 0.08 2.91 -27.88 -0.08 0.00 15 10 C -0.03 -0.47 2.43 -92.92 -0.23 -0.69 15 11 H 0.11 1.95 7.87 -51.93 -0.41 1.54 15 12 C 0.48 9.16 6.90 36.01 0.25 9.41 15 13 O -0.48 -11.05 15.74 -18.75 -0.30 -11.35 15 14 O -0.53 -7.95 13.34 -39.25 -0.52 -8.47 15 15 C -0.07 -1.14 4.71 -104.62 -0.49 -1.64 15 16 C -0.08 -1.26 8.86 -39.59 -0.35 -1.61 15 17 C -0.15 -2.02 10.03 -39.51 -0.40 -2.41 15 18 C 0.09 1.15 7.30 -39.42 -0.29 0.86 15 19 F -0.15 -1.93 17.27 2.25 0.04 -1.90 15 20 C -0.15 -1.89 10.03 -39.51 -0.40 -2.28 15 21 C -0.08 -1.05 9.67 -39.60 -0.38 -1.43 15 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.02 0.59 6.82 -51.93 -0.35 0.23 15 24 H 0.03 0.76 7.20 -51.93 -0.37 0.39 15 25 H 0.40 4.25 9.10 45.56 0.41 4.67 15 26 H 0.13 2.04 7.65 -52.49 -0.40 1.63 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.14 1.51 7.94 -52.49 -0.42 1.10 15 LS Contribution 264.01 15.07 3.98 3.98 Total: -1.00 -33.11 264.01 -5.41 -38.52 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -1.96 Total: 1.68 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.75 Total: -12.32 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.77 Total: -27.11 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.82 Total: -19.82 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.11 -5.41 -38.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.800 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds