Wall clock time and date at job start Mon Mar 30 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47124 * 305.00081 * 10 9 7 12 12 C 1.50699 * 109.46955 * 65.00198 * 10 9 7 13 13 O 1.20822 * 120.00018 * 359.97438 * 12 10 9 14 14 O 1.34229 * 120.00115 * 179.97438 * 12 10 9 15 15 C 1.50700 * 109.47200 * 185.00128 * 10 9 7 16 16 C 1.38245 * 119.97026 * 299.72688 * 15 10 9 17 17 C 1.38205 * 120.02225 * 179.76891 * 16 15 10 18 18 C 1.38457 * 119.97369 * 0.50381 * 17 16 15 19 19 F 1.35094 * 120.02831 * 179.76967 * 18 17 16 20 20 C 1.38465 * 119.94821 * 359.74857 * 18 17 16 21 21 C 1.38195 * 119.97220 * 359.97438 * 20 18 17 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 0.96699 * 117.00343 * 179.97438 * 14 12 10 26 26 H 1.07995 * 119.99134 * 0.02562 * 16 15 10 27 27 H 1.07995 * 120.01052 * 180.25611 * 17 16 15 28 28 H 1.07997 * 120.00899 * 179.97438 * 20 18 17 29 29 H 1.08001 * 119.98582 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 1 3.5831 -3.1733 0.8599 12 6 3.6280 -3.3141 -1.2691 13 8 3.0036 -2.7057 -2.1056 14 8 3.9714 -4.5934 -1.4866 15 6 5.5227 -2.6383 0.1485 16 6 6.2998 -2.0181 -0.8121 17 6 7.6766 -2.0148 -0.6913 18 6 8.2779 -2.6419 0.3868 19 9 9.6238 -2.6433 0.5035 20 6 7.4987 -3.2672 1.3454 21 6 6.1220 -3.2643 1.2255 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 3.6965 -4.9850 -2.3269 26 1 5.8308 -1.5325 -1.6550 27 1 8.2833 -1.5267 -1.4396 28 1 7.9668 -3.7570 2.1865 29 1 5.5140 -3.7516 1.9734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:39 Heat of formation + Delta-G solvation = -141.110395 kcal Electronic energy + Delta-G solvation = -16450.030599 eV Core-core repulsion = 13444.415663 eV Total energy + Delta-G solvation = -3005.614936 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86901 -41.48000 -39.83639 -37.09069 -35.75611 -34.10141 -32.10569 -30.73166 -27.76993 -24.37798 -24.07775 -23.21860 -21.02878 -19.22412 -18.86582 -18.57741 -17.75054 -17.20478 -16.66947 -16.53742 -16.25228 -15.71622 -15.02097 -14.76447 -14.47931 -14.38272 -14.13452 -13.79812 -13.43882 -13.09436 -12.89074 -12.37959 -12.28191 -12.02551 -11.85706 -11.76132 -11.50063 -11.26208 -10.72308 -10.04990 -9.54081 -8.24347 -6.25511 0.11005 0.28982 1.37185 1.38353 1.40563 1.48601 2.23403 2.38384 2.66167 3.12613 3.28269 3.66423 3.77069 3.99231 4.14831 4.29537 4.36376 4.54411 4.77816 4.97941 5.01268 5.14564 5.15249 5.26489 5.29489 5.57873 5.63964 5.73929 5.92407 6.24951 6.75949 7.18131 7.35526 8.93101 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007684 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.504421 B = 3642.980477 C = 4259.507067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.004 3.996 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.030 0.970 9 C 0.008 3.992 10 C -0.023 4.023 11 H 0.122 0.878 12 C 0.485 3.515 13 O -0.528 6.528 14 O -0.512 6.512 15 C -0.088 4.088 16 C -0.096 4.096 17 C -0.150 4.150 18 C 0.083 3.917 19 F -0.145 7.145 20 C -0.144 4.144 21 C -0.074 4.074 22 H 0.264 0.736 23 H 0.020 0.980 24 H 0.045 0.955 25 H 0.420 0.580 26 H 0.122 0.878 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.244 -7.173 1.617 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.766 3.234 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.544 4.544 8 H 0.048 0.952 9 C -0.030 4.030 10 C -0.042 4.042 11 H 0.139 0.861 12 C 0.328 3.672 13 O -0.416 6.416 14 O -0.325 6.325 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.168 4.168 18 C 0.064 3.936 19 F -0.123 7.123 20 C -0.162 4.162 21 C -0.092 4.092 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.280 0.720 26 H 0.140 0.860 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 17.110 -6.729 1.762 18.469 hybrid contribution -0.479 0.578 -0.914 1.183 sum 16.630 -6.152 0.848 17.752 Atomic orbital electron populations 1.70062 1.08258 1.27841 1.53394 1.25880 0.95538 1.03211 0.94588 0.85788 0.79972 0.78843 0.78835 1.20153 1.20939 1.16122 1.21186 0.91193 0.92951 1.49053 0.95167 1.19488 0.94539 0.91250 0.97685 1.19950 0.92859 0.97798 0.93569 0.86053 1.23493 0.74999 0.79786 0.88960 1.90756 1.37460 1.66336 1.47064 1.84505 1.74654 1.27341 1.46015 1.19644 0.92903 0.99595 0.96736 1.20973 0.93278 0.98213 0.98980 1.21210 0.94917 1.01895 0.98827 1.17872 0.76885 1.01502 0.97364 1.91477 1.29790 1.95019 1.96043 1.21370 0.93648 1.01314 0.99901 1.21177 0.94214 0.96855 0.96944 0.92739 0.96202 0.93675 0.71965 0.85967 0.83130 0.81895 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.89 13.96 21.45 0.30 -60.59 15 2 C 0.00 0.23 5.47 84.66 0.46 0.69 15 3 Si 0.94 44.65 27.47 68.60 1.88 46.53 15 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 15 7 C -0.51 -28.88 8.30 25.60 0.21 -28.67 15 8 H 0.03 1.91 7.85 -2.91 -0.02 1.89 15 9 C 0.01 0.35 2.91 29.85 0.09 0.43 15 10 C -0.02 -0.83 2.43 -12.29 -0.03 -0.86 15 11 H 0.12 4.11 7.87 -2.39 -0.02 4.09 15 12 C 0.49 18.48 6.90 71.24 0.49 18.97 15 13 O -0.53 -25.10 15.74 21.98 0.35 -24.75 15 14 O -0.51 -14.61 13.34 -51.40 -0.69 -15.29 15 15 C -0.09 -2.58 4.71 -19.86 -0.09 -2.68 15 16 C -0.10 -2.73 8.86 22.26 0.20 -2.53 15 17 C -0.15 -3.61 10.03 22.31 0.22 -3.38 15 18 C 0.08 1.92 7.30 22.38 0.16 2.09 15 19 F -0.14 -3.36 17.27 44.97 0.78 -2.58 15 20 C -0.14 -2.96 10.03 22.31 0.22 -2.74 15 21 C -0.07 -1.71 9.67 22.26 0.22 -1.49 15 22 H 0.26 15.76 8.31 -92.71 -0.77 14.99 15 23 H 0.02 0.92 6.82 -2.39 -0.02 0.90 15 24 H 0.05 1.94 7.20 -2.38 -0.02 1.92 15 25 H 0.42 8.29 9.10 -74.06 -0.67 7.62 15 26 H 0.12 3.67 7.65 -2.91 -0.02 3.65 15 27 H 0.15 2.98 8.06 -2.91 -0.02 2.95 15 28 H 0.16 2.39 8.06 -2.91 -0.02 2.36 15 29 H 0.16 2.89 7.94 -2.91 -0.02 2.86 15 Total: -1.00 -73.05 264.01 5.23 -67.82 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.45 Total: 9.03 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 2.15 Total: -20.17 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.30 Total: -60.59 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.34 Total: -40.05 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -73.05 5.23 -67.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.289 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds