Wall clock time and date at job start Mon Mar 30 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48500 * 109.46878 * 239.99717 * 3 2 1 5 5 H 1.48508 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47200 * 119.99822 * 3 2 1 7 7 C 1.37868 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00798 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47510 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47287 * 54.99313 * 10 9 7 12 12 C 1.50706 * 109.47078 * 294.99720 * 10 9 7 13 13 O 1.20819 * 119.99973 * 240.00143 * 12 10 9 14 14 O 1.34233 * 119.99642 * 59.99554 * 12 10 9 15 15 C 1.50696 * 109.47430 * 174.99876 * 10 9 7 16 16 C 1.38248 * 119.97128 * 239.99664 * 15 10 9 17 17 C 1.38196 * 120.02483 * 179.97438 * 16 15 10 18 18 C 1.38458 * 119.97492 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.02786 * 179.97438 * 18 17 16 20 20 C 1.38465 * 119.94675 * 0.24873 * 18 17 16 21 21 C 1.38197 * 119.97511 * 359.47283 * 20 18 17 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47316 * 59.99407 * 9 7 2 24 24 H 1.09001 * 109.46868 * 299.99739 * 9 7 2 25 25 H 0.96698 * 116.99904 * 180.02562 * 14 12 10 26 26 H 1.08001 * 119.98881 * 0.02562 * 16 15 10 27 27 H 1.07995 * 120.01604 * 180.02562 * 17 16 15 28 28 H 1.08007 * 120.01064 * 179.75151 * 20 18 17 29 29 H 1.07994 * 119.98821 * 180.29814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7466 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8423 12 6 3.0281 -3.6537 -1.2872 13 8 2.9821 -4.6068 -2.0283 14 8 3.7763 -2.5872 -1.6109 15 6 1.4960 -4.9636 0.1244 16 6 1.7394 -5.8012 1.1969 17 6 1.0524 -6.9949 1.3119 18 6 0.1206 -7.3519 0.3521 19 9 -0.5512 -8.5189 0.4632 20 6 -0.1182 -6.5148 -0.7247 21 6 0.5657 -5.3190 -0.8345 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8903 25 1 4.2602 -2.6279 -2.4471 26 1 2.4660 -5.5223 1.9457 27 1 1.2424 -7.6489 2.1500 28 1 -0.8420 -6.7942 -1.4761 29 1 0.3762 -4.6636 -1.6717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:42 Heat of formation + Delta-G solvation = -124.676583 kcal Electronic energy + Delta-G solvation = -16420.158290 eV Core-core repulsion = 13415.255978 eV Total energy + Delta-G solvation = -3004.902313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.68403 -40.01846 -38.45121 -35.40571 -34.22297 -32.11156 -30.87727 -28.83183 -25.69185 -22.93120 -22.60886 -22.06254 -19.73016 -17.50921 -17.40260 -16.53145 -16.31346 -15.39377 -15.31332 -15.00763 -14.87827 -14.31556 -13.76999 -13.28203 -13.05785 -12.73018 -12.34962 -11.99400 -11.66372 -11.47516 -11.08578 -10.87048 -10.78333 -10.66495 -10.51985 -9.71623 -9.66049 -9.25005 -8.80493 -8.43082 -8.22253 -6.06653 -4.08772 1.40092 1.53355 2.90199 3.31353 3.36197 3.38651 3.64977 4.08636 4.41838 4.49058 4.97400 5.06124 5.13651 5.29994 5.55208 5.58705 5.90780 5.92869 6.19144 6.26645 6.35046 6.39324 6.51495 6.85676 7.11026 7.17756 7.45009 7.45844 7.92010 8.22905 8.61581 8.98449 9.55641 11.04564 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.006562 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.282758 B = 4266.124861 C = 4674.392629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.036 3.964 10 C -0.043 4.043 11 H 0.107 0.893 12 C 0.500 3.500 13 O -0.540 6.540 14 O -0.486 6.486 15 C -0.067 4.067 16 C -0.086 4.086 17 C -0.158 4.158 18 C 0.086 3.914 19 F -0.147 7.147 20 C -0.155 4.155 21 C -0.053 4.053 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.391 0.609 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -9.587 0.488 10.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.001 4.001 10 C -0.062 4.062 11 H 0.125 0.875 12 C 0.344 3.656 13 O -0.431 6.431 14 O -0.294 6.294 15 C -0.067 4.067 16 C -0.104 4.104 17 C -0.177 4.177 18 C 0.067 3.933 19 F -0.126 7.126 20 C -0.174 4.174 21 C -0.071 4.071 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.247 0.753 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.912 -9.736 0.678 10.185 hybrid contribution 0.547 0.722 -0.581 1.076 sum 3.459 -9.014 0.096 9.655 Atomic orbital electron populations 1.69951 1.06105 1.26935 1.50579 1.24982 0.94773 0.99313 0.95208 0.86596 0.79467 0.82861 0.78673 1.20203 1.21521 1.20226 1.21248 0.93688 0.89949 1.50729 0.90969 1.19197 0.92691 0.89406 0.98833 1.20291 0.97812 0.94968 0.93102 0.87509 1.23378 0.75882 0.78412 0.87908 1.90642 1.63221 1.36385 1.52894 1.84860 1.58043 1.43074 1.43393 1.19699 0.96909 0.95179 0.94961 1.20883 0.99017 0.92741 0.97739 1.20979 0.98295 0.98744 0.99711 1.17684 0.95199 0.83175 0.97292 1.91456 1.78996 1.46032 1.96140 1.21072 1.02726 0.95393 0.98224 1.20877 0.93342 0.94854 0.98074 0.92853 0.95777 0.94504 0.75301 0.85021 0.85109 0.85072 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 13.29 55.43 0.74 -24.93 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.52 -13.41 8.05 -34.44 -0.28 -13.69 15 8 H 0.07 1.81 6.36 -52.49 -0.33 1.48 15 9 C 0.04 0.84 4.18 -27.88 -0.12 0.73 15 10 C -0.04 -0.82 2.46 -92.93 -0.23 -1.05 15 11 H 0.11 1.89 7.87 -51.93 -0.41 1.48 15 12 C 0.50 9.64 7.48 36.01 0.27 9.91 15 13 O -0.54 -11.00 15.87 -18.74 -0.30 -11.30 15 14 O -0.49 -8.69 11.02 -39.27 -0.43 -9.12 15 15 C -0.07 -1.19 4.40 -104.62 -0.46 -1.65 15 16 C -0.09 -1.29 9.67 -39.59 -0.38 -1.68 15 17 C -0.16 -2.25 10.03 -39.52 -0.40 -2.65 15 18 C 0.09 1.31 7.30 -39.42 -0.29 1.02 15 19 F -0.15 -2.21 17.27 2.25 0.04 -2.17 15 20 C -0.16 -2.44 10.03 -39.51 -0.40 -2.83 15 21 C -0.05 -0.94 7.98 -39.59 -0.32 -1.25 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.02 0.61 7.57 -51.93 -0.39 0.22 15 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.39 4.97 9.10 45.56 0.41 5.38 15 26 H 0.13 1.65 7.94 -52.49 -0.42 1.23 15 27 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 28 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 29 H 0.13 2.37 7.57 -52.49 -0.40 1.98 15 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -30.43 264.31 -5.62 -36.05 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -1.94 Total: 3.34 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.69 Total: -11.65 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.74 Total: -24.93 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.73 Total: -20.42 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.43 -5.62 -36.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.630 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds