Wall clock time and date at job start Mon Mar 30 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48500 * 109.46878 * 239.99717 * 3 2 1 5 5 H 1.48508 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47200 * 119.99822 * 3 2 1 7 7 C 1.37868 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00798 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47510 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47287 * 54.99313 * 10 9 7 12 12 C 1.50706 * 109.47078 * 294.99720 * 10 9 7 13 13 O 1.20819 * 119.99973 * 240.00143 * 12 10 9 14 14 O 1.34233 * 119.99642 * 59.99554 * 12 10 9 15 15 C 1.50696 * 109.47430 * 174.99876 * 10 9 7 16 16 C 1.38248 * 119.97128 * 239.99664 * 15 10 9 17 17 C 1.38196 * 120.02483 * 179.97438 * 16 15 10 18 18 C 1.38458 * 119.97492 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.02786 * 179.97438 * 18 17 16 20 20 C 1.38465 * 119.94675 * 0.24873 * 18 17 16 21 21 C 1.38197 * 119.97511 * 359.47283 * 20 18 17 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47316 * 59.99407 * 9 7 2 24 24 H 1.09001 * 109.46868 * 299.99739 * 9 7 2 25 25 H 0.96698 * 116.99904 * 180.02562 * 14 12 10 26 26 H 1.08001 * 119.98881 * 0.02562 * 16 15 10 27 27 H 1.07995 * 120.01604 * 180.02562 * 17 16 15 28 28 H 1.08007 * 120.01064 * 179.75151 * 20 18 17 29 29 H 1.07994 * 119.98821 * 180.29814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7466 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8423 12 6 3.0281 -3.6537 -1.2872 13 8 2.9821 -4.6068 -2.0283 14 8 3.7763 -2.5872 -1.6109 15 6 1.4960 -4.9636 0.1244 16 6 1.7394 -5.8012 1.1969 17 6 1.0524 -6.9949 1.3119 18 6 0.1206 -7.3519 0.3521 19 9 -0.5512 -8.5189 0.4632 20 6 -0.1182 -6.5148 -0.7247 21 6 0.5657 -5.3190 -0.8345 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8903 25 1 4.2602 -2.6279 -2.4471 26 1 2.4660 -5.5223 1.9457 27 1 1.2424 -7.6489 2.1500 28 1 -0.8420 -6.7942 -1.4761 29 1 0.3762 -4.6636 -1.6717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:42 Heat of formation + Delta-G solvation = -142.736033 kcal Electronic energy + Delta-G solvation = -16420.941407 eV Core-core repulsion = 13415.255978 eV Total energy + Delta-G solvation = -3005.685429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87252 -41.48204 -39.75651 -36.88831 -35.95582 -33.92240 -32.08494 -30.38359 -27.43646 -24.51218 -24.03724 -23.47739 -21.17697 -19.04740 -18.65008 -18.34601 -17.71692 -16.85572 -16.55259 -16.54023 -16.37652 -15.96807 -15.08170 -14.49095 -14.41735 -14.31671 -14.01448 -13.58653 -13.26809 -13.02311 -12.72845 -12.43815 -12.38162 -12.33543 -11.94610 -11.48397 -11.28832 -11.20279 -10.48497 -10.01048 -9.51774 -8.12208 -6.20036 0.14478 0.32740 1.37036 1.48044 1.49511 1.57047 2.31494 2.48176 2.79436 3.23082 3.28742 3.69926 3.78530 3.99753 4.24633 4.36414 4.54439 4.58701 4.64236 4.99648 5.05165 5.15242 5.25996 5.43385 5.46629 5.65772 5.76200 5.87018 5.94749 6.23067 6.94976 7.23197 7.48375 8.99404 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.006562 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.282758 B = 4266.124861 C = 4674.392629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.082 0.918 9 C 0.045 3.955 10 C -0.036 4.036 11 H 0.126 0.874 12 C 0.502 3.498 13 O -0.553 6.553 14 O -0.492 6.492 15 C -0.089 4.089 16 C -0.083 4.083 17 C -0.149 4.149 18 C 0.081 3.919 19 F -0.144 7.144 20 C -0.160 4.160 21 C -0.074 4.074 22 H 0.260 0.740 23 H -0.005 1.005 24 H 0.015 0.985 25 H 0.413 0.587 26 H 0.161 0.839 27 H 0.165 0.835 28 H 0.147 0.853 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -10.203 1.344 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.100 0.900 9 C 0.008 3.992 10 C -0.055 4.055 11 H 0.143 0.857 12 C 0.347 3.653 13 O -0.445 6.445 14 O -0.303 6.303 15 C -0.089 4.089 16 C -0.100 4.100 17 C -0.168 4.168 18 C 0.062 3.938 19 F -0.123 7.123 20 C -0.178 4.178 21 C -0.093 4.093 22 H 0.069 0.931 23 H 0.013 0.987 24 H 0.034 0.966 25 H 0.273 0.727 26 H 0.179 0.821 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.371 -10.357 1.520 11.344 hybrid contribution 0.097 0.849 -0.870 1.219 sum 4.468 -9.509 0.650 10.526 Atomic orbital electron populations 1.70093 1.07771 1.27577 1.52347 1.25841 0.95488 1.02981 0.95209 0.85584 0.78181 0.78556 0.79190 1.19379 1.21896 1.19065 1.21661 0.94290 0.90771 1.49189 0.90030 1.18934 0.92988 0.90871 0.96376 1.20123 0.97121 0.94218 0.94002 0.85673 1.23320 0.75855 0.78430 0.87724 1.90632 1.63755 1.36991 1.53153 1.84776 1.58030 1.42458 1.45055 1.19721 0.97552 0.95263 0.96377 1.21189 0.99286 0.92384 0.97165 1.21339 0.96839 0.98583 0.99990 1.17832 0.95440 0.83140 0.97405 1.91466 1.78980 1.45766 1.96104 1.21210 1.02776 0.94826 0.99033 1.20828 0.94623 0.95640 0.98163 0.93085 0.98661 0.96648 0.72702 0.82122 0.81748 0.83552 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.68 13.29 21.44 0.28 -54.40 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.96 42.38 29.54 68.60 2.03 44.41 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 7 C -0.52 -26.89 8.05 25.60 0.21 -26.68 15 8 H 0.08 3.98 6.36 -2.91 -0.02 3.97 15 9 C 0.05 2.19 4.18 29.85 0.12 2.31 15 10 C -0.04 -1.36 2.46 -12.29 -0.03 -1.39 15 11 H 0.13 4.22 7.87 -2.39 -0.02 4.20 15 12 C 0.50 19.02 7.48 71.24 0.53 19.55 15 13 O -0.55 -22.26 15.87 21.99 0.35 -21.91 15 14 O -0.49 -16.95 11.02 -51.44 -0.57 -17.51 15 15 C -0.09 -3.08 4.40 -19.86 -0.09 -3.16 15 16 C -0.08 -2.29 9.67 22.26 0.22 -2.07 15 17 C -0.15 -3.79 10.03 22.31 0.22 -3.57 15 18 C 0.08 2.32 7.30 22.38 0.16 2.49 15 19 F -0.14 -4.01 17.27 44.97 0.78 -3.23 15 20 C -0.16 -4.93 10.03 22.31 0.22 -4.70 15 21 C -0.07 -2.64 7.98 22.26 0.18 -2.46 15 22 H 0.26 14.53 8.31 -92.71 -0.77 13.75 15 23 H 0.00 -0.26 7.57 -2.39 -0.02 -0.28 15 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 25 H 0.41 9.81 9.10 -74.06 -0.67 9.14 15 26 H 0.16 3.44 7.94 -2.91 -0.02 3.42 15 27 H 0.16 3.05 8.06 -2.91 -0.02 3.03 15 28 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 29 H 0.11 4.30 7.57 -2.91 -0.02 4.28 15 Total: -1.00 -64.75 264.31 5.59 -59.16 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.51 Total: 12.60 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 2.21 Total: -19.11 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.28 Total: -54.40 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.22 Total: -39.42 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.75 5.59 -59.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.581 kcal (2) G-P(sol) polarization free energy of solvation -64.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds