Wall clock time and date at job start Mon Mar 30 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48504 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47240 * 299.99704 * 3 2 1 6 6 H 1.48493 * 109.47222 * 60.00113 * 3 2 1 7 7 C 1.37866 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00167 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47285 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47450 * 304.99843 * 10 9 7 12 12 C 1.50695 * 109.47376 * 64.99779 * 10 9 7 13 13 O 1.20826 * 120.00030 * 119.99797 * 12 10 9 14 14 O 1.34231 * 120.00257 * 300.00089 * 12 10 9 15 15 C 1.50703 * 109.47119 * 184.99924 * 10 9 7 16 16 C 1.38265 * 119.98460 * 119.99938 * 15 10 9 17 17 C 1.38230 * 120.05232 * 179.97438 * 16 15 10 18 18 C 1.38221 * 120.01866 * 359.97438 * 17 16 15 19 19 C 1.38437 * 119.97771 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.02231 * 180.02562 * 19 18 17 21 21 C 1.38170 * 119.98887 * 299.97700 * 15 10 9 22 22 H 0.97003 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47042 * 59.99931 * 9 7 2 24 24 H 1.08997 * 109.47255 * 300.00125 * 9 7 2 25 25 H 0.96701 * 116.99992 * 179.97438 * 14 12 10 26 26 H 1.07998 * 119.98228 * 359.70181 * 16 15 10 27 27 H 1.07993 * 119.98797 * 179.97438 * 17 16 15 28 28 H 1.08010 * 120.00681 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.01158 * 0.04483 * 21 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9295 -3.5551 -0.8424 12 6 3.0282 -3.6536 1.2871 13 8 2.9824 -4.6067 2.0282 14 8 3.7765 -2.5872 1.6107 15 6 1.4960 -4.9636 -0.1243 16 6 1.7391 -5.8016 -1.1969 17 6 1.0529 -6.9961 -1.3116 18 6 0.1232 -7.3542 -0.3535 19 6 -0.1202 -6.5165 0.7214 20 9 -1.0283 -6.8659 1.6586 21 6 0.5666 -5.3194 0.8342 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 4.2605 -2.6280 2.4469 26 1 2.4624 -5.5207 -1.9481 27 1 1.2433 -7.6496 -2.1500 28 1 -0.4131 -8.2874 -0.4435 29 1 0.3767 -4.6645 1.6718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887388.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:34 Heat of formation + Delta-G solvation = -124.406705 kcal Electronic energy + Delta-G solvation = -16527.198832 eV Core-core repulsion = 13522.308222 eV Total energy + Delta-G solvation = -3004.890610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.58647 -40.01261 -38.45432 -35.41493 -34.30548 -32.21791 -30.27357 -29.22281 -25.84170 -22.74919 -22.70307 -21.99737 -19.79407 -17.51140 -17.02762 -16.38595 -16.17153 -15.90263 -15.31225 -15.13149 -14.94041 -14.34436 -13.65613 -13.17874 -13.02257 -12.63037 -12.30322 -11.96610 -11.62688 -11.49418 -11.04318 -10.99519 -10.83497 -10.63424 -10.53746 -9.71700 -9.67933 -9.22992 -8.57896 -8.43893 -8.37109 -6.06535 -4.08699 1.42341 1.52246 2.89989 3.29074 3.37235 3.41792 3.65047 4.07428 4.41908 4.51703 4.93146 5.06764 5.26260 5.30906 5.46565 5.66156 5.86153 5.87262 6.16081 6.27318 6.37693 6.41643 6.51994 6.81359 7.11476 7.19200 7.45153 7.45504 7.92369 8.22659 8.61421 8.99165 9.55873 11.04807 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.007058 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.305765 B = 3966.309107 C = 4227.789091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.035 3.965 10 C -0.044 4.044 11 H 0.109 0.891 12 C 0.500 3.500 13 O -0.540 6.540 14 O -0.485 6.485 15 C -0.030 4.030 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.162 4.162 19 C 0.092 3.908 20 F -0.145 7.145 21 C -0.115 4.115 22 H 0.261 0.739 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.391 0.609 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -10.356 -1.483 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.002 4.002 10 C -0.063 4.063 11 H 0.127 0.873 12 C 0.344 3.656 13 O -0.431 6.431 14 O -0.293 6.293 15 C -0.030 4.030 16 C -0.142 4.142 17 C -0.116 4.116 18 C -0.181 4.181 19 C 0.073 3.927 20 F -0.123 7.123 21 C -0.134 4.134 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.247 0.753 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.181 -10.476 -1.629 11.069 hybrid contribution 0.456 0.887 0.799 1.278 sum 3.637 -9.589 -0.830 10.289 Atomic orbital electron populations 1.69977 1.06124 1.26728 1.50714 1.24992 0.94775 0.99363 0.95215 0.86482 0.80231 0.83520 0.77446 1.19501 1.21162 1.21177 1.21318 0.93763 0.89876 1.50515 0.90815 1.19216 0.92693 0.89430 0.98903 1.20326 0.97870 0.94856 0.93267 0.87268 1.23333 0.75924 0.78467 0.87870 1.90653 1.63159 1.36401 1.52841 1.84856 1.58022 1.43023 1.43411 1.19465 0.95083 0.94667 0.93813 1.21092 1.00698 0.94158 0.98272 1.20860 0.95741 0.96647 0.98328 1.21023 1.01572 1.00483 0.95030 1.17657 0.91169 0.95367 0.88481 1.91466 1.64884 1.92106 1.63863 1.20989 0.96394 0.95519 1.00484 0.92953 0.94447 0.95751 0.75261 0.85335 0.85297 0.85285 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.19 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 15 7 C -0.52 -13.50 8.05 -34.44 -0.28 -13.77 15 8 H 0.07 1.87 6.37 -52.49 -0.33 1.54 15 9 C 0.03 0.83 4.18 -27.88 -0.12 0.71 15 10 C -0.04 -0.86 2.46 -92.92 -0.23 -1.09 15 11 H 0.11 1.95 7.88 -51.93 -0.41 1.54 15 12 C 0.50 9.84 7.47 36.00 0.27 10.11 15 13 O -0.54 -11.28 15.87 -18.75 -0.30 -11.58 15 14 O -0.49 -8.80 11.02 -39.26 -0.43 -9.24 15 15 C -0.03 -0.54 4.40 -104.64 -0.46 -1.00 15 16 C -0.12 -1.85 9.67 -39.57 -0.38 -2.23 15 17 C -0.10 -1.28 10.04 -39.59 -0.40 -1.68 15 18 C -0.16 -2.29 10.03 -39.51 -0.40 -2.69 15 19 C 0.09 1.57 7.30 -39.42 -0.29 1.28 15 20 F -0.14 -2.48 17.27 2.25 0.04 -2.44 15 21 C -0.12 -2.16 7.96 -39.52 -0.31 -2.47 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.02 0.63 7.57 -51.93 -0.39 0.24 15 25 H 0.39 5.06 9.10 45.56 0.41 5.47 15 26 H 0.13 1.60 7.94 -52.49 -0.42 1.18 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.13 1.47 8.06 -52.48 -0.42 1.05 15 29 H 0.13 2.66 7.58 -52.49 -0.40 2.26 15 LS Contribution 264.32 15.07 3.98 3.98 Total: -1.00 -31.13 264.32 -5.62 -36.75 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -1.94 Total: 3.15 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.69 Total: -11.36 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.73 Total: -20.81 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.13 -5.62 -36.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887388.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.655 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds