Wall clock time and date at job start Mon Mar 30 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48504 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47240 * 299.99704 * 3 2 1 6 6 H 1.48493 * 109.47222 * 60.00113 * 3 2 1 7 7 C 1.37866 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00167 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47285 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47450 * 304.99843 * 10 9 7 12 12 C 1.50695 * 109.47376 * 64.99779 * 10 9 7 13 13 O 1.20826 * 120.00030 * 119.99797 * 12 10 9 14 14 O 1.34231 * 120.00257 * 300.00089 * 12 10 9 15 15 C 1.50703 * 109.47119 * 184.99924 * 10 9 7 16 16 C 1.38265 * 119.98460 * 119.99938 * 15 10 9 17 17 C 1.38230 * 120.05232 * 179.97438 * 16 15 10 18 18 C 1.38221 * 120.01866 * 359.97438 * 17 16 15 19 19 C 1.38437 * 119.97771 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.02231 * 180.02562 * 19 18 17 21 21 C 1.38170 * 119.98887 * 299.97700 * 15 10 9 22 22 H 0.97003 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47042 * 59.99931 * 9 7 2 24 24 H 1.08997 * 109.47255 * 300.00125 * 9 7 2 25 25 H 0.96701 * 116.99992 * 179.97438 * 14 12 10 26 26 H 1.07998 * 119.98228 * 359.70181 * 16 15 10 27 27 H 1.07993 * 119.98797 * 179.97438 * 17 16 15 28 28 H 1.08010 * 120.00681 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.01158 * 0.04483 * 21 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9295 -3.5551 -0.8424 12 6 3.0282 -3.6536 1.2871 13 8 2.9824 -4.6067 2.0282 14 8 3.7765 -2.5872 1.6107 15 6 1.4960 -4.9636 -0.1243 16 6 1.7391 -5.8016 -1.1969 17 6 1.0529 -6.9961 -1.3116 18 6 0.1232 -7.3542 -0.3535 19 6 -0.1202 -6.5165 0.7214 20 9 -1.0283 -6.8659 1.6586 21 6 0.5666 -5.3194 0.8342 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 4.2605 -2.6280 2.4469 26 1 2.4624 -5.5207 -1.9481 27 1 1.2433 -7.6496 -2.1500 28 1 -0.4131 -8.2874 -0.4435 29 1 0.3767 -4.6645 1.6718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887388.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:34 Heat of formation + Delta-G solvation = -143.669261 kcal Electronic energy + Delta-G solvation = -16528.034119 eV Core-core repulsion = 13522.308222 eV Total energy + Delta-G solvation = -3005.725897 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.89549 -41.50790 -39.75584 -36.93157 -36.03394 -34.03828 -31.50593 -30.75722 -27.63132 -24.51737 -24.04491 -23.36849 -21.26397 -19.11173 -18.54130 -17.97033 -17.73260 -17.10445 -16.80525 -16.56278 -16.51085 -16.11505 -14.93000 -14.65219 -14.40142 -14.23532 -13.98255 -13.58309 -13.13359 -12.94964 -12.68840 -12.54075 -12.41537 -12.32744 -12.12244 -11.48944 -11.32525 -11.19784 -10.53138 -9.86233 -9.61691 -8.14766 -6.23112 0.19733 0.29572 1.32872 1.44921 1.46810 1.59642 2.30637 2.46383 2.79320 3.20583 3.25641 3.65181 3.85811 4.10798 4.31474 4.33028 4.46345 4.55013 4.59784 4.94966 5.13515 5.18736 5.34756 5.40262 5.42572 5.61724 5.72564 5.84743 5.98111 6.19569 6.92630 7.19468 7.45708 8.97569 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.007058 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.305765 B = 3966.309107 C = 4227.789091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.084 0.916 9 C 0.045 3.955 10 C -0.038 4.038 11 H 0.131 0.869 12 C 0.501 3.499 13 O -0.555 6.555 14 O -0.491 6.491 15 C -0.055 4.055 16 C -0.121 4.121 17 C -0.083 4.083 18 C -0.151 4.151 19 C 0.070 3.930 20 F -0.152 7.152 21 C -0.144 4.144 22 H 0.261 0.739 23 H 0.016 0.984 24 H -0.011 1.011 25 H 0.414 0.586 26 H 0.159 0.841 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -11.509 -3.073 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.557 4.557 8 H 0.102 0.898 9 C 0.008 3.992 10 C -0.056 4.056 11 H 0.149 0.851 12 C 0.346 3.654 13 O -0.447 6.447 14 O -0.302 6.302 15 C -0.055 4.055 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.169 4.169 19 C 0.051 3.949 20 F -0.131 7.131 21 C -0.163 4.163 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.008 0.992 25 H 0.273 0.727 26 H 0.176 0.824 27 H 0.195 0.805 28 H 0.181 0.819 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.810 -11.632 -3.206 12.989 hybrid contribution -0.042 1.179 1.305 1.759 sum 4.769 -10.453 -1.901 11.646 Atomic orbital electron populations 1.70119 1.07901 1.27521 1.52449 1.25890 0.95509 1.03181 0.95152 0.85432 0.79577 0.79062 0.77168 1.17913 1.20868 1.21399 1.21718 0.94350 0.90625 1.49023 0.89820 1.18938 0.92995 0.91106 0.96188 1.20176 0.97152 0.94158 0.94158 0.85130 1.23327 0.75867 0.78464 0.87741 1.90641 1.63752 1.37133 1.53175 1.84772 1.57984 1.42355 1.45064 1.19466 0.95713 0.94954 0.95353 1.21495 1.00978 0.94102 0.97303 1.21415 0.93695 0.96112 0.98781 1.21471 1.01210 1.00787 0.93470 1.17922 0.91585 0.95650 0.89722 1.91437 1.65172 1.92088 1.64427 1.20893 0.98388 0.96463 1.00555 0.93059 0.96549 0.99241 0.72667 0.82378 0.80461 0.81942 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.80 13.29 21.44 0.28 -55.51 15 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 15 3 Si 0.96 42.91 29.54 68.60 2.03 44.93 15 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 7 C -0.52 -27.28 8.05 25.60 0.21 -27.07 15 8 H 0.08 4.15 6.37 -2.91 -0.02 4.14 15 9 C 0.04 2.23 4.18 29.85 0.12 2.35 15 10 C -0.04 -1.47 2.46 -12.29 -0.03 -1.50 15 11 H 0.13 4.45 7.88 -2.39 -0.02 4.44 15 12 C 0.50 19.73 7.47 71.23 0.53 20.27 15 13 O -0.55 -23.41 15.87 21.96 0.35 -23.06 15 14 O -0.49 -17.40 11.02 -51.42 -0.57 -17.97 15 15 C -0.05 -1.96 4.40 -19.87 -0.09 -2.04 15 16 C -0.12 -3.25 9.67 22.27 0.22 -3.03 15 17 C -0.08 -1.80 10.04 22.26 0.22 -1.58 15 18 C -0.15 -3.81 10.03 22.31 0.22 -3.59 15 19 C 0.07 2.38 7.30 22.37 0.16 2.54 15 20 F -0.15 -5.32 17.27 44.97 0.78 -4.55 15 21 C -0.14 -5.61 7.96 22.31 0.18 -5.43 15 22 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 24 H -0.01 -0.60 7.57 -2.39 -0.02 -0.62 15 25 H 0.41 10.21 9.10 -74.06 -0.67 9.53 15 26 H 0.16 3.25 7.94 -2.91 -0.02 3.23 15 27 H 0.18 2.22 8.06 -2.91 -0.02 2.20 15 28 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 29 H 0.10 4.42 7.58 -2.91 -0.02 4.40 15 Total: -1.00 -69.13 264.32 5.59 -63.54 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.51 Total: 11.24 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 2.21 Total: -18.63 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.22 Total: -41.02 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.13 5.59 -63.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887388.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.124 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds