Wall clock time and date at job start Mon Mar 30 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48495 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47178 * 60.00303 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 C 1.50699 * 109.47078 * 295.00096 * 10 9 7 13 13 O 1.20827 * 120.00172 * 359.97438 * 12 10 9 14 14 O 1.34231 * 120.00242 * 180.02562 * 12 10 9 15 15 C 1.50701 * 109.47212 * 174.99887 * 10 9 7 16 16 C 1.38270 * 119.98397 * 59.72606 * 15 10 9 17 17 C 1.38224 * 120.04639 * 179.72161 * 16 15 10 18 18 C 1.38217 * 120.02666 * 0.55464 * 17 16 15 19 19 C 1.38431 * 119.97481 * 359.71659 * 18 17 16 20 20 F 1.35102 * 120.02851 * 180.02562 * 19 18 17 21 21 C 1.38175 * 119.98814 * 239.99688 * 15 10 9 22 22 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 24 24 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 25 25 H 0.96696 * 117.00233 * 180.02562 * 14 12 10 26 26 H 1.07998 * 119.97916 * 359.97438 * 16 15 10 27 27 H 1.08006 * 119.98629 * 180.27380 * 17 16 15 28 28 H 1.08005 * 120.00997 * 179.70414 * 18 17 16 29 29 H 1.08002 * 120.01269 * 0.02562 * 21 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 6 3.0280 -3.6537 -1.2882 13 8 2.8126 -2.8050 -2.1208 14 8 3.9640 -4.5897 -1.5108 15 6 1.4958 -4.9637 0.1233 16 6 0.5613 -5.3167 -0.8327 17 6 -0.1227 -6.5128 -0.7235 18 6 0.1186 -7.3521 0.3479 19 6 1.0499 -6.9971 1.3086 20 9 1.2869 -7.8170 2.3560 21 6 1.7387 -5.8012 1.1952 22 1 -0.4849 0.8402 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 4.4403 -4.5432 -2.3510 26 1 0.3686 -4.6593 -1.6676 27 1 -0.8492 -6.7897 -1.4732 28 1 -0.4195 -8.2845 0.4355 29 1 2.4652 -5.5230 1.9443 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:37 Heat of formation + Delta-G solvation = -123.342587 kcal Electronic energy + Delta-G solvation = -16437.096183 eV Core-core repulsion = 13432.251716 eV Total energy + Delta-G solvation = -3004.844466 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.73840 -39.97901 -38.56074 -35.60034 -34.07861 -32.26955 -30.44775 -29.07445 -25.96155 -22.87936 -22.54007 -22.21995 -19.58832 -17.67462 -17.08467 -16.51263 -16.13210 -15.94992 -15.47199 -15.34479 -14.83663 -14.45173 -13.81851 -13.19197 -12.88775 -12.74841 -12.31550 -12.00315 -11.60929 -11.49168 -11.09355 -10.95978 -10.79680 -10.55704 -10.42404 -9.82621 -9.73460 -9.19317 -8.72497 -8.41536 -8.36425 -6.00546 -4.00906 1.34196 1.39426 2.93807 3.33016 3.40305 3.44455 3.58991 3.89843 4.39377 4.48208 4.87370 4.97672 5.22154 5.37397 5.43250 5.54789 5.84348 5.88598 5.97465 6.22896 6.28728 6.47224 6.52362 6.74538 7.03425 7.10122 7.48639 7.59867 7.93042 8.29309 8.60349 8.98305 9.61275 11.11177 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.006818 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.882743 B = 4105.896669 C = 4419.037377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.037 4.037 11 H 0.106 0.894 12 C 0.479 3.521 13 O -0.478 6.478 14 O -0.529 6.529 15 C -0.031 4.031 16 C -0.118 4.118 17 C -0.090 4.090 18 C -0.163 4.163 19 C 0.093 3.907 20 F -0.145 7.145 21 C -0.143 4.143 22 H 0.260 0.740 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.397 0.603 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -13.290 -0.396 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.004 3.996 10 C -0.056 4.056 11 H 0.124 0.876 12 C 0.320 3.680 13 O -0.362 6.362 14 O -0.342 6.342 15 C -0.031 4.031 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.182 4.182 19 C 0.074 3.926 20 F -0.123 7.123 21 C -0.162 4.162 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.254 0.746 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.079 -12.963 -0.219 13.131 hybrid contribution 0.790 0.877 -0.362 1.234 sum 2.869 -12.086 -0.581 12.436 Atomic orbital electron populations 1.69958 1.05964 1.26552 1.51033 1.24899 0.94818 0.99125 0.95255 0.86513 0.80075 0.83791 0.77482 1.19855 1.21008 1.21075 1.21013 0.92699 0.90446 1.50298 0.92885 1.19174 0.92611 0.89038 0.98794 1.20459 0.97463 0.94737 0.92940 0.87593 1.23454 0.77574 0.77647 0.89366 1.90750 1.64352 1.35539 1.45510 1.84606 1.50764 1.54325 1.44459 1.19607 0.95559 0.94349 0.93600 1.21215 0.95996 0.96662 0.99744 1.20947 0.99017 0.93666 0.97203 1.21047 0.99908 1.01748 0.95472 1.17628 0.98774 0.89894 0.86275 1.91470 1.93675 1.71558 1.55643 1.21042 1.01693 0.93346 1.00096 0.93020 0.94919 0.94706 0.74588 0.85098 0.85145 0.85178 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 15 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.51 -14.06 7.75 -34.44 -0.27 -14.33 15 8 H 0.05 1.46 7.61 -52.48 -0.40 1.06 15 9 C 0.04 1.01 3.84 -27.89 -0.11 0.90 15 10 C -0.04 -0.73 2.43 -92.92 -0.23 -0.95 15 11 H 0.11 1.96 7.88 -51.93 -0.41 1.55 15 12 C 0.48 9.40 6.92 36.01 0.25 9.64 15 13 O -0.48 -11.15 15.74 -18.75 -0.30 -11.44 15 14 O -0.53 -8.15 13.34 -39.26 -0.52 -8.68 15 15 C -0.03 -0.53 4.71 -104.63 -0.49 -1.02 15 16 C -0.12 -1.89 8.87 -39.57 -0.35 -2.25 15 17 C -0.09 -1.20 10.04 -39.59 -0.40 -1.59 15 18 C -0.16 -2.12 10.03 -39.52 -0.40 -2.52 15 19 C 0.09 1.36 7.30 -39.42 -0.29 1.07 15 20 F -0.14 -2.09 17.27 2.25 0.04 -2.05 15 21 C -0.14 -2.21 9.65 -39.51 -0.38 -2.59 15 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 23 H 0.03 0.87 7.37 -51.93 -0.38 0.49 15 24 H 0.03 0.90 8.14 -51.92 -0.42 0.48 15 25 H 0.40 4.29 9.10 45.56 0.41 4.71 15 26 H 0.13 2.19 7.62 -52.49 -0.40 1.79 15 27 H 0.13 1.35 8.06 -52.48 -0.42 0.93 15 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 15 29 H 0.14 1.89 7.95 -52.49 -0.42 1.47 15 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -32.20 267.58 -5.78 -37.98 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -2.00 Total: 1.13 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.75 Total: -12.01 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.82 Total: -20.12 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.20 -5.78 -37.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.362 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds