Wall clock time and date at job start Mon Mar 30 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47520 * 240.00374 * 3 2 1 5 5 H 1.48495 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00285 * 3 2 1 7 7 C 1.37878 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00324 * 185.15313 * 7 2 1 9 9 C 1.50706 * 120.00070 * 5.15001 * 7 2 1 10 10 H 1.08997 * 109.46804 * 325.32864 * 9 7 2 11 11 C 1.52991 * 109.47139 * 205.32440 * 9 7 2 12 12 C 1.50704 * 109.47187 * 65.90514 * 11 9 7 13 13 O 1.20824 * 119.99654 * 5.83059 * 12 11 9 14 14 O 1.34228 * 120.00065 * 185.82781 * 12 11 9 15 15 C 1.50703 * 109.46666 * 85.32390 * 9 7 2 16 16 C 1.38212 * 120.01293 * 60.00702 * 15 9 7 17 17 C 1.38229 * 120.02704 * 179.97438 * 16 15 9 18 18 C 1.38270 * 120.04706 * 0.02562 * 17 16 15 19 19 C 1.38171 * 120.02738 * 359.97438 * 18 17 16 20 20 C 1.38440 * 120.01175 * 239.72262 * 15 9 7 21 21 F 1.35100 * 120.02450 * 0.02562 * 20 15 9 22 22 H 0.96998 * 119.99974 * 354.99519 * 1 2 3 23 23 H 1.09002 * 109.46719 * 185.90156 * 11 9 7 24 24 H 1.08994 * 109.47359 * 305.90341 * 11 9 7 25 25 H 0.96698 * 117.00205 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.98825 * 359.94804 * 16 15 9 27 27 H 1.07993 * 119.97406 * 179.97438 * 17 16 15 28 28 H 1.07994 * 119.98378 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.01497 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0835 9 6 1.2556 -2.4965 -0.1183 10 1 0.2992 -2.4136 0.3978 11 6 2.0811 -3.6184 0.5146 12 6 2.1979 -3.3807 1.9982 13 8 1.5888 -2.4739 2.5144 14 8 2.9786 -4.1763 2.7460 15 6 1.0160 -2.8084 -1.5731 16 6 2.0873 -2.9605 -2.4331 17 6 1.8679 -3.2470 -3.7674 18 6 0.5767 -3.3813 -4.2435 19 6 -0.4958 -3.2296 -3.3856 20 6 -0.2770 -2.9484 -2.0474 21 9 -1.3247 -2.8051 -1.2066 22 1 -0.4850 0.8368 0.0733 23 1 1.5898 -4.5752 0.3375 24 1 3.0760 -3.6330 0.0696 25 1 3.0215 -3.9849 3.6929 26 1 3.0962 -2.8550 -2.0625 27 1 2.7055 -3.3653 -4.4387 28 1 0.4064 -3.6048 -5.2862 29 1 -1.5043 -3.3341 -3.7577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:47 Heat of formation + Delta-G solvation = -121.598549 kcal Electronic energy + Delta-G solvation = -16896.090751 eV Core-core repulsion = 13891.321912 eV Total energy + Delta-G solvation = -3004.768839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.78648 -39.41986 -38.21135 -35.46938 -34.15133 -31.59563 -29.73891 -29.07025 -25.87754 -23.32859 -21.91700 -21.03915 -19.37778 -17.30444 -16.71322 -16.63806 -15.82210 -15.08846 -14.90613 -14.72488 -14.55646 -14.37365 -13.33518 -12.71123 -12.69783 -12.18214 -12.12870 -11.95323 -11.49136 -11.20020 -10.93273 -10.73880 -10.62331 -10.57770 -10.13614 -9.66725 -9.50723 -9.19533 -8.45444 -8.11964 -7.66237 -5.98839 -4.04922 1.99000 2.07073 3.15300 3.33581 3.38092 3.39601 3.84690 4.39228 4.47814 5.20389 5.31540 5.47928 5.56417 5.82940 5.95116 6.02929 6.06143 6.14359 6.27815 6.63813 6.71777 6.83898 7.02610 7.15757 7.18775 7.27551 7.72450 7.76875 7.91329 8.23134 8.77845 8.95472 9.57758 11.08158 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.012015 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.550166 B = 2329.793702 C = 3143.600907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.074 3.926 10 H 0.080 0.920 11 C -0.094 4.094 12 C 0.471 3.529 13 O -0.479 6.479 14 O -0.538 6.538 15 C -0.058 4.058 16 C -0.090 4.090 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.166 4.166 20 C 0.101 3.899 21 F -0.134 7.134 22 H 0.263 0.737 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.396 0.604 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -8.003 -3.495 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.055 3.945 10 H 0.098 0.902 11 C -0.132 4.132 12 C 0.312 3.688 13 O -0.363 6.363 14 O -0.350 6.350 15 C -0.060 4.060 16 C -0.108 4.108 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.185 4.185 20 C 0.082 3.918 21 F -0.112 7.112 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.253 0.747 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.834 -7.667 -3.803 9.015 hybrid contribution 0.286 1.305 0.671 1.495 sum 3.120 -6.362 -3.132 7.747 Atomic orbital electron populations 1.69925 1.05832 1.27038 1.47806 1.24916 0.94785 0.99078 0.94174 0.86712 0.79729 0.83408 0.78507 1.20190 1.21255 1.20296 1.20692 0.92599 0.89433 1.51725 0.92715 1.17835 0.98811 0.91562 0.86300 0.90188 1.21495 1.03359 1.01428 0.86913 1.23653 0.75535 0.78829 0.90795 1.90758 1.42648 1.29336 1.73554 1.84577 1.66214 1.58927 1.25295 1.20752 0.90543 0.94221 1.00468 1.20851 0.98969 0.98485 0.92472 1.21029 0.96442 1.02777 0.95849 1.20661 0.92342 1.02548 0.98651 1.20979 0.99682 1.05400 0.92447 1.17625 0.84425 1.02185 0.87591 1.91471 1.55769 1.93102 1.70898 0.92756 0.90268 0.89285 0.74731 0.85815 0.86787 0.86637 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.56 12.91 55.43 0.72 -24.84 15 2 C 0.08 2.10 5.45 -17.82 -0.10 2.00 15 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.51 -13.47 6.74 -34.44 -0.23 -13.70 15 8 H 0.05 1.42 7.81 -52.49 -0.41 1.01 15 9 C 0.07 1.77 1.59 -92.92 -0.15 1.62 15 10 H 0.08 2.24 6.21 -51.93 -0.32 1.92 15 11 C -0.09 -1.85 4.99 -27.89 -0.14 -1.99 15 12 C 0.47 9.56 8.02 36.01 0.29 9.85 15 13 O -0.48 -11.82 15.91 -18.75 -0.30 -12.12 15 14 O -0.54 -8.51 13.42 -39.25 -0.53 -9.04 15 15 C -0.06 -1.29 4.78 -104.56 -0.50 -1.79 15 16 C -0.09 -1.71 8.87 -39.59 -0.35 -2.06 15 17 C -0.14 -2.35 10.05 -39.57 -0.40 -2.75 15 18 C -0.12 -2.00 10.04 -39.59 -0.40 -2.40 15 19 C -0.17 -3.04 10.03 -39.52 -0.40 -3.44 15 20 C 0.10 2.22 7.25 -39.42 -0.29 1.93 15 21 F -0.13 -3.20 16.19 2.25 0.04 -3.17 15 22 H 0.26 7.45 8.32 -40.82 -0.34 7.11 15 23 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.09 1.58 7.60 -51.93 -0.39 1.19 15 25 H 0.40 4.52 9.10 45.56 0.41 4.93 15 26 H 0.12 2.20 7.65 -52.48 -0.40 1.80 15 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.12 1.91 8.06 -52.49 -0.42 1.48 15 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -32.11 266.12 -5.68 -37.79 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -1.94 Total: 3.39 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.66 Total: -12.71 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.72 Total: -24.84 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.83 Total: -21.15 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.11 -5.68 -37.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.809 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds