Wall clock time and date at job start Mon Mar 30 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47520 * 240.00374 * 3 2 1 5 5 H 1.48495 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00285 * 3 2 1 7 7 C 1.37878 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00324 * 185.15313 * 7 2 1 9 9 C 1.50706 * 120.00070 * 5.15001 * 7 2 1 10 10 H 1.08997 * 109.46804 * 325.32864 * 9 7 2 11 11 C 1.52991 * 109.47139 * 205.32440 * 9 7 2 12 12 C 1.50704 * 109.47187 * 65.90514 * 11 9 7 13 13 O 1.20824 * 119.99654 * 5.83059 * 12 11 9 14 14 O 1.34228 * 120.00065 * 185.82781 * 12 11 9 15 15 C 1.50703 * 109.46666 * 85.32390 * 9 7 2 16 16 C 1.38212 * 120.01293 * 60.00702 * 15 9 7 17 17 C 1.38229 * 120.02704 * 179.97438 * 16 15 9 18 18 C 1.38270 * 120.04706 * 0.02562 * 17 16 15 19 19 C 1.38171 * 120.02738 * 359.97438 * 18 17 16 20 20 C 1.38440 * 120.01175 * 239.72262 * 15 9 7 21 21 F 1.35100 * 120.02450 * 0.02562 * 20 15 9 22 22 H 0.96998 * 119.99974 * 354.99519 * 1 2 3 23 23 H 1.09002 * 109.46719 * 185.90156 * 11 9 7 24 24 H 1.08994 * 109.47359 * 305.90341 * 11 9 7 25 25 H 0.96698 * 117.00205 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.98825 * 359.94804 * 16 15 9 27 27 H 1.07993 * 119.97406 * 179.97438 * 17 16 15 28 28 H 1.07994 * 119.98378 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.01497 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0835 9 6 1.2556 -2.4965 -0.1183 10 1 0.2992 -2.4136 0.3978 11 6 2.0811 -3.6184 0.5146 12 6 2.1979 -3.3807 1.9982 13 8 1.5888 -2.4739 2.5144 14 8 2.9786 -4.1763 2.7460 15 6 1.0160 -2.8084 -1.5731 16 6 2.0873 -2.9605 -2.4331 17 6 1.8679 -3.2470 -3.7674 18 6 0.5767 -3.3813 -4.2435 19 6 -0.4958 -3.2296 -3.3856 20 6 -0.2770 -2.9484 -2.0474 21 9 -1.3247 -2.8051 -1.2066 22 1 -0.4850 0.8368 0.0733 23 1 1.5898 -4.5752 0.3375 24 1 3.0760 -3.6330 0.0696 25 1 3.0215 -3.9849 3.6929 26 1 3.0962 -2.8550 -2.0625 27 1 2.7055 -3.3653 -4.4387 28 1 0.4064 -3.6048 -5.2862 29 1 -1.5043 -3.3341 -3.7577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:47 Heat of formation + Delta-G solvation = -142.398222 kcal Electronic energy + Delta-G solvation = -16896.992692 eV Core-core repulsion = 13891.321912 eV Total energy + Delta-G solvation = -3005.670781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.48676 -41.02597 -39.67679 -36.99700 -35.90717 -33.52478 -31.16786 -30.57147 -27.77053 -25.05108 -23.39936 -22.52133 -21.04227 -18.86026 -18.59453 -18.20613 -17.40318 -16.71314 -16.54101 -16.45210 -16.20131 -16.05252 -14.78944 -14.51867 -14.26719 -13.82120 -13.67957 -13.62159 -13.01162 -12.81231 -12.74285 -12.52814 -12.28698 -12.24475 -11.74082 -11.43231 -11.29460 -11.03370 -10.51659 -9.56682 -9.20289 -8.05154 -6.15379 0.53727 0.63796 1.38554 1.40460 1.46296 1.54482 2.40783 2.43544 2.97477 3.27230 3.75923 4.09069 4.25580 4.38498 4.42537 4.55221 4.64552 4.69281 4.79763 5.13842 5.31731 5.39434 5.56868 5.58425 5.68111 5.79114 5.84633 5.99956 6.23708 6.33077 6.93426 7.30111 7.49367 9.01066 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.012015 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.550166 B = 2329.793702 C = 3143.600907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.075 3.925 10 H 0.028 0.972 11 C -0.093 4.093 12 C 0.478 3.522 13 O -0.534 6.534 14 O -0.518 6.518 15 C -0.084 4.084 16 C -0.098 4.098 17 C -0.129 4.129 18 C -0.110 4.110 19 C -0.168 4.168 20 C 0.058 3.942 21 F -0.160 7.160 22 H 0.255 0.745 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.418 0.582 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -9.184 -5.689 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.182 4.182 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.056 3.944 10 H 0.046 0.954 11 C -0.130 4.130 12 C 0.321 3.679 13 O -0.422 6.422 14 O -0.332 6.332 15 C -0.086 4.086 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.128 4.128 19 C -0.186 4.186 20 C 0.039 3.961 21 F -0.139 7.139 22 H 0.064 0.936 23 H 0.121 0.879 24 H 0.133 0.867 25 H 0.279 0.721 26 H 0.153 0.847 27 H 0.175 0.825 28 H 0.178 0.822 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.002 -8.885 -5.990 11.825 hybrid contribution -0.311 1.515 1.326 2.037 sum 4.691 -7.369 -4.664 9.903 Atomic orbital electron populations 1.70106 1.07281 1.26934 1.50515 1.25673 0.95430 1.02307 0.94809 0.85851 0.78522 0.79916 0.78805 1.18694 1.21751 1.20292 1.21036 0.92733 0.90588 1.49638 0.92417 1.17597 0.96598 0.92272 0.87955 0.95383 1.21446 1.04153 1.00891 0.86559 1.23756 0.74749 0.78046 0.91313 1.90755 1.44997 1.31873 1.74590 1.84502 1.64418 1.57262 1.26985 1.20610 0.91725 0.96736 0.99510 1.21053 0.98458 0.98592 0.93504 1.21507 0.98056 1.00086 0.95078 1.21206 0.91409 0.99916 1.00285 1.21302 1.01743 1.04522 0.91070 1.18149 0.84071 1.04841 0.89027 1.91397 1.56823 1.93676 1.71981 0.93618 0.87933 0.86735 0.72144 0.84737 0.82540 0.82173 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 12.91 21.45 0.28 -55.70 15 2 C 0.02 1.01 5.45 84.66 0.46 1.47 15 3 Si 0.94 45.22 29.54 68.60 2.03 47.25 15 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 15 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 15 7 C -0.50 -27.01 6.74 25.60 0.17 -26.83 15 8 H 0.06 2.98 7.81 -2.91 -0.02 2.95 15 9 C 0.07 3.67 1.59 -12.29 -0.02 3.65 15 10 H 0.03 1.66 6.21 -2.39 -0.01 1.65 15 11 C -0.09 -3.59 4.99 29.85 0.15 -3.45 15 12 C 0.48 19.26 8.02 71.24 0.57 19.83 15 13 O -0.53 -27.10 15.91 21.97 0.35 -26.75 15 14 O -0.52 -15.36 13.42 -51.40 -0.69 -16.05 15 15 C -0.08 -3.72 4.78 -19.82 -0.09 -3.81 15 16 C -0.10 -3.49 8.87 22.26 0.20 -3.29 15 17 C -0.13 -3.66 10.05 22.28 0.22 -3.44 15 18 C -0.11 -3.07 10.04 22.26 0.22 -2.85 15 19 C -0.17 -5.83 10.03 22.31 0.22 -5.61 15 20 C 0.06 2.58 7.25 22.38 0.16 2.75 15 21 F -0.16 -8.10 16.19 44.97 0.73 -7.38 15 22 H 0.25 15.24 8.32 -92.71 -0.77 14.47 15 23 H 0.10 3.45 8.14 -2.39 -0.02 3.43 15 24 H 0.11 3.81 7.60 -2.39 -0.02 3.79 15 25 H 0.42 8.69 9.10 -74.06 -0.67 8.01 15 26 H 0.13 4.39 7.65 -2.91 -0.02 4.37 15 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 28 H 0.16 3.08 8.06 -2.91 -0.02 3.05 15 29 H 0.14 4.15 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -73.61 266.12 5.47 -68.14 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.51 Total: 12.08 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 2.27 Total: -21.59 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.34 Total: -42.80 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.73 Total: -7.38 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.61 5.47 -68.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.259 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds