Wall clock time and date at job start Mon Mar 30 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48493 * 109.47317 * 240.00039 * 3 2 1 5 5 H 1.48506 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46830 * 119.99971 * 3 2 1 7 7 C 1.37877 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99893 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46729 * 299.99613 * 9 7 2 11 11 C 1.52995 * 109.47078 * 59.99548 * 9 7 2 12 12 C 1.50702 * 109.46790 * 185.00155 * 11 9 7 13 13 O 1.20822 * 120.00133 * 359.97438 * 12 11 9 14 14 O 1.34236 * 119.99978 * 180.02562 * 12 11 9 15 15 C 1.50696 * 109.46863 * 179.97438 * 9 7 2 16 16 C 1.38248 * 119.97128 * 119.99689 * 15 9 7 17 17 C 1.38196 * 120.02483 * 179.97438 * 16 15 9 18 18 C 1.38458 * 119.97492 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.02786 * 179.97438 * 18 17 16 20 20 C 1.38465 * 119.94675 * 0.24873 * 18 17 16 21 21 C 1.38197 * 119.97511 * 359.47283 * 20 18 17 22 22 H 0.96995 * 120.00624 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47416 * 304.99766 * 11 9 7 24 24 H 1.09002 * 109.47422 * 65.00411 * 11 9 7 25 25 H 0.96698 * 117.00287 * 179.97438 * 14 12 11 26 26 H 1.08001 * 119.98881 * 0.02562 * 16 15 9 27 27 H 1.07995 * 120.01604 * 180.02562 * 17 16 15 28 28 H 1.08007 * 120.01064 * 179.75151 * 20 18 17 29 29 H 1.07994 * 119.98821 * 180.29814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8881 11 6 0.3719 -2.5794 -1.2512 12 6 -0.4728 -3.8260 -1.1920 13 8 -0.3806 -4.5739 -0.2475 14 8 -1.3268 -4.1062 -2.1890 15 6 2.2304 -3.6445 -0.0027 16 6 2.2241 -4.5595 1.0337 17 6 3.1214 -5.6106 1.0336 18 6 4.0272 -5.7468 -0.0047 19 9 4.9052 -6.7736 -0.0056 20 6 4.0363 -4.8265 -1.0393 21 6 3.1342 -3.7795 -1.0400 22 1 -0.4851 0.8399 0.0004 23 1 -0.2756 -1.7037 -1.2968 24 1 1.0038 -2.6105 -2.1388 25 1 -1.8469 -4.9172 -2.1067 26 1 1.5172 -4.4533 1.8432 27 1 3.1161 -6.3255 1.8430 28 1 4.7451 -4.9295 -1.8477 29 1 3.1379 -3.0644 -1.8492 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887397.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:50 Heat of formation + Delta-G solvation = -142.118830 kcal Electronic energy + Delta-G solvation = -16657.575799 eV Core-core repulsion = 13651.917134 eV Total energy + Delta-G solvation = -3005.658665 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.77981 -41.18776 -39.82411 -36.99464 -36.03421 -33.27032 -31.92613 -30.13579 -27.97546 -24.79698 -23.80155 -22.69901 -21.09971 -19.01355 -18.53631 -18.23586 -17.29982 -17.22301 -16.63416 -16.47952 -16.34642 -15.81998 -14.94152 -14.51448 -14.27708 -14.22334 -13.80219 -13.50307 -13.30254 -12.86981 -12.56565 -12.38552 -12.33208 -12.22654 -11.78223 -11.50260 -11.39769 -11.13178 -10.48146 -9.88361 -9.26017 -8.13449 -6.27840 0.39088 0.45792 1.46412 1.49323 1.50662 1.57496 2.41085 2.49744 2.86114 3.19935 3.40763 3.94289 4.06524 4.23584 4.50439 4.56480 4.62787 4.69692 4.95353 5.10772 5.26530 5.29081 5.39532 5.47398 5.57084 5.75314 5.88055 6.02089 6.14181 6.26855 6.80292 7.23265 7.42113 8.91400 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.009253 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.420115 B = 3025.394891 C = 3985.344274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.097 3.903 10 H 0.010 0.990 11 C -0.101 4.101 12 C 0.477 3.523 13 O -0.544 6.544 14 O -0.519 6.519 15 C -0.061 4.061 16 C -0.090 4.090 17 C -0.156 4.156 18 C 0.061 3.939 19 F -0.149 7.149 20 C -0.152 4.152 21 C -0.098 4.098 22 H 0.266 0.734 23 H 0.116 0.884 24 H 0.095 0.905 25 H 0.417 0.583 26 H 0.118 0.882 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -6.857 -3.661 8.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.079 3.921 10 H 0.028 0.972 11 C -0.139 4.139 12 C 0.322 3.678 13 O -0.435 6.435 14 O -0.332 6.332 15 C -0.061 4.061 16 C -0.108 4.108 17 C -0.174 4.174 18 C 0.042 3.958 19 F -0.128 7.128 20 C -0.171 4.171 21 C -0.116 4.116 22 H 0.076 0.924 23 H 0.133 0.867 24 H 0.113 0.887 25 H 0.277 0.723 26 H 0.136 0.864 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.886 -6.618 -3.446 8.000 hybrid contribution -0.160 0.215 0.335 0.429 sum 2.726 -6.403 -3.111 7.623 Atomic orbital electron populations 1.69892 1.07124 1.27912 1.50458 1.25673 0.95588 1.02210 0.94237 0.85629 0.78366 0.78911 0.78896 1.19058 1.21139 1.20307 1.21316 0.93266 0.90187 1.51298 0.91964 1.17500 0.91044 0.90765 0.92806 0.97226 1.21643 0.97973 0.92669 1.01639 1.24347 0.77483 0.87322 0.78643 1.90611 1.66859 1.50918 1.35068 1.84572 1.52480 1.48457 1.47716 1.20434 0.96330 0.95416 0.93900 1.20938 0.97505 0.93680 0.98649 1.21199 0.96619 1.00348 0.99256 1.17722 0.92071 0.87997 0.98005 1.91433 1.67374 1.57201 1.96752 1.21273 1.01564 0.95073 0.99147 1.21027 0.94290 0.97272 0.98997 0.92421 0.86681 0.88674 0.72282 0.86389 0.83623 0.82883 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.30 11.29 21.45 0.24 -48.05 15 2 C 0.02 1.14 5.29 84.65 0.45 1.59 15 3 Si 0.96 40.34 29.54 68.60 2.03 42.37 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 5 H -0.29 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 15 7 C -0.52 -26.22 8.24 25.60 0.21 -26.01 15 8 H 0.06 3.08 7.60 -2.92 -0.02 3.06 15 9 C 0.10 4.60 1.61 -12.29 -0.02 4.58 15 10 H 0.01 0.52 7.69 -2.39 -0.02 0.50 15 11 C -0.10 -4.38 5.02 29.85 0.15 -4.23 15 12 C 0.48 18.94 8.08 71.24 0.58 19.52 15 13 O -0.54 -23.67 14.95 21.98 0.33 -23.34 15 14 O -0.52 -16.28 13.42 -51.47 -0.69 -16.97 15 15 C -0.06 -2.52 3.69 -19.86 -0.07 -2.60 15 16 C -0.09 -3.52 8.63 22.26 0.19 -3.33 15 17 C -0.16 -5.31 10.03 22.31 0.22 -5.09 15 18 C 0.06 2.03 7.30 22.38 0.16 2.20 15 19 F -0.15 -4.70 17.27 44.97 0.78 -3.92 15 20 C -0.15 -4.89 10.03 22.31 0.22 -4.67 15 21 C -0.10 -3.57 8.65 22.26 0.19 -3.38 15 22 H 0.27 13.47 8.31 -92.71 -0.77 12.70 15 23 H 0.12 5.53 5.95 -2.39 -0.01 5.52 15 24 H 0.10 3.76 7.22 -2.39 -0.02 3.74 15 25 H 0.42 8.73 9.10 -74.06 -0.67 8.06 15 26 H 0.12 4.70 7.94 -2.91 -0.02 4.68 15 27 H 0.15 4.18 8.06 -2.91 -0.02 4.15 15 28 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 29 H 0.14 4.75 7.54 -2.91 -0.02 4.73 15 Total: -1.00 -58.08 261.84 5.48 -52.60 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.51 Total: 18.75 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 2.29 Total: -21.43 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.24 Total: -48.05 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.36 Total: -40.31 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.92 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -58.08 5.48 -52.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887397.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.518 kcal (2) G-P(sol) polarization free energy of solvation -58.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds