Wall clock time and date at job start Mon Mar 30 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46999 * 299.99877 * 3 2 1 6 6 H 1.48500 * 109.47296 * 60.00153 * 3 2 1 7 7 C 1.37885 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99774 * 184.93815 * 7 2 1 9 9 C 1.50692 * 120.00399 * 4.93175 * 7 2 1 10 10 H 1.09008 * 109.46946 * 329.59396 * 9 7 2 11 11 C 1.52994 * 109.47613 * 209.59649 * 9 7 2 12 12 C 1.50698 * 109.47264 * 64.99513 * 11 9 7 13 13 O 1.20819 * 120.00200 * 0.02562 * 12 11 9 14 14 O 1.34234 * 119.99715 * 180.02562 * 12 11 9 15 15 C 1.50703 * 109.47134 * 89.59107 * 9 7 2 16 16 C 1.38239 * 119.97297 * 56.75226 * 15 9 7 17 17 C 1.38198 * 120.02923 * 179.76568 * 16 15 9 18 18 C 1.38463 * 119.96744 * 0.51581 * 17 16 15 19 19 F 1.35101 * 120.02413 * 179.76488 * 18 17 16 20 20 C 1.38455 * 119.95323 * 359.73756 * 18 17 16 21 21 C 1.38201 * 119.97303 * 0.02562 * 20 18 17 22 22 H 0.96994 * 120.00229 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46818 * 304.99695 * 11 9 7 24 24 H 1.09004 * 109.47329 * 185.00302 * 11 9 7 25 25 H 0.96700 * 116.99399 * 179.97438 * 14 12 11 26 26 H 1.08006 * 119.98531 * 0.02562 * 16 15 9 27 27 H 1.07996 * 120.01786 * 180.25925 * 17 16 15 28 28 H 1.07998 * 120.01768 * 179.97438 * 20 18 17 29 29 H 1.08002 * 119.99136 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 0.0800 9 6 1.2552 -2.4967 -0.1133 10 1 0.2696 -2.3894 0.3398 11 6 2.0327 -3.5969 0.6119 12 6 2.0796 -3.2902 2.0866 13 8 1.5455 -2.2943 2.5139 14 8 2.7148 -4.1237 2.9255 15 6 1.1025 -2.8642 -1.5668 16 6 2.2214 -2.9886 -2.3690 17 6 2.0830 -3.3302 -3.7009 18 6 0.8222 -3.5375 -4.2344 19 9 0.6853 -3.8669 -5.5375 20 6 -0.2981 -3.4075 -3.4313 21 6 -0.1569 -3.0706 -2.0985 22 1 -0.4850 0.8400 -0.0004 23 1 3.0481 -3.6440 0.2181 24 1 1.5376 -4.5553 0.4555 25 1 2.7184 -3.8848 3.8625 26 1 3.2045 -2.8228 -1.9536 27 1 2.9575 -3.4314 -4.3265 28 1 -1.2821 -3.5685 -3.8464 29 1 -1.0306 -2.9695 -1.4716 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:52 Heat of formation + Delta-G solvation = -123.989856 kcal Electronic energy + Delta-G solvation = -16523.038836 eV Core-core repulsion = 13518.166302 eV Total energy + Delta-G solvation = -3004.872534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.31730 -39.45551 -38.33486 -35.45239 -34.00230 -31.54435 -30.39872 -28.76874 -25.83639 -23.16111 -22.28021 -21.06294 -19.43289 -17.29612 -16.98067 -16.73579 -15.91859 -15.23369 -15.01580 -14.91222 -14.58102 -14.30153 -13.23151 -12.99330 -12.74128 -12.70456 -12.22157 -11.99132 -11.60323 -11.04424 -10.95698 -10.70490 -10.60535 -10.47730 -10.34187 -9.65736 -9.51502 -9.19146 -8.48266 -8.38187 -7.66438 -6.06591 -4.07909 1.95362 1.97735 3.14496 3.29839 3.37733 3.39443 3.83542 4.37436 4.45650 4.92232 5.28729 5.42561 5.46325 5.89550 5.98944 6.01988 6.08378 6.14980 6.23013 6.57739 6.68499 6.81186 6.88353 7.14495 7.24164 7.28521 7.67612 7.71856 7.87365 8.20316 8.77545 8.92373 9.55039 11.03170 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.009543 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.965929 B = 2933.404784 C = 3890.751592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.074 3.926 10 H 0.077 0.923 11 C -0.095 4.095 12 C 0.468 3.532 13 O -0.475 6.475 14 O -0.539 6.539 15 C -0.033 4.033 16 C -0.086 4.086 17 C -0.160 4.160 18 C 0.058 3.942 19 F -0.157 7.157 20 C -0.157 4.157 21 C -0.091 4.091 22 H 0.261 0.739 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.395 0.605 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 -7.809 -1.522 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.056 3.944 10 H 0.095 0.905 11 C -0.133 4.133 12 C 0.308 3.692 13 O -0.358 6.358 14 O -0.352 6.352 15 C -0.033 4.033 16 C -0.104 4.104 17 C -0.179 4.179 18 C 0.039 3.961 19 F -0.136 7.136 20 C -0.176 4.176 21 C -0.109 4.109 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.252 0.748 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.311 -7.491 -1.873 8.060 hybrid contribution 0.415 1.251 0.263 1.344 sum 2.726 -6.240 -1.611 6.998 Atomic orbital electron populations 1.69890 1.05957 1.26641 1.48957 1.24850 0.94740 0.99093 0.93983 0.86601 0.80210 0.84055 0.77521 1.19763 1.21024 1.21001 1.20772 0.92650 0.89546 1.51015 0.92693 1.17916 0.99081 0.91502 0.85949 0.90501 1.21526 1.03572 1.01322 0.86909 1.23688 0.74957 0.80477 0.90039 1.90777 1.41352 1.25866 1.77834 1.84586 1.73026 1.54564 1.22989 1.20760 0.91674 0.91447 0.99459 1.20865 0.99674 0.97984 0.91923 1.21004 0.95328 1.04770 0.96834 1.17594 0.94854 1.05593 0.78080 1.91405 1.96842 1.90814 1.34499 1.21006 0.97116 1.04590 0.94877 1.20988 0.98167 0.98063 0.93692 0.92924 0.89302 0.90321 0.74767 0.85569 0.86121 0.86131 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 12.85 55.43 0.71 -24.00 15 2 C 0.08 2.09 5.45 -17.82 -0.10 1.99 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 7 C -0.50 -12.84 6.38 -34.44 -0.22 -13.06 15 8 H 0.05 1.40 7.82 -52.48 -0.41 0.99 15 9 C 0.07 1.67 1.68 -92.93 -0.16 1.51 15 10 H 0.08 1.97 6.95 -51.92 -0.36 1.61 15 11 C -0.10 -1.77 5.06 -27.89 -0.14 -1.91 15 12 C 0.47 9.08 8.08 36.00 0.29 9.37 15 13 O -0.48 -11.29 15.74 -18.74 -0.30 -11.59 15 14 O -0.54 -8.20 13.42 -39.27 -0.53 -8.73 15 15 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 15 16 C -0.09 -1.62 8.86 -39.60 -0.35 -1.97 15 17 C -0.16 -2.80 10.03 -39.51 -0.40 -3.19 15 18 C 0.06 1.04 7.30 -39.42 -0.29 0.75 15 19 F -0.16 -2.75 17.27 2.25 0.04 -2.71 15 20 C -0.16 -2.81 10.03 -39.52 -0.40 -3.21 15 21 C -0.09 -1.78 9.67 -39.59 -0.38 -2.16 15 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.09 1.52 7.76 -51.93 -0.40 1.11 15 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.40 4.31 9.10 45.56 0.41 4.72 15 26 H 0.13 2.22 7.75 -52.48 -0.41 1.81 15 27 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 28 H 0.12 1.88 8.06 -52.49 -0.42 1.45 15 29 H 0.13 2.43 7.95 -52.49 -0.42 2.02 15 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -30.28 267.34 -5.69 -35.97 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.99 Total: 3.77 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.64 Total: -13.05 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.71 Total: -24.00 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.82 Total: -20.32 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.28 -5.69 -35.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.019 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds