Wall clock time and date at job start Mon Mar 30 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47183 * 264.78171 * 3 2 1 5 5 H 1.48505 * 109.46630 * 24.78240 * 3 2 1 6 6 H 1.48498 * 109.46855 * 144.77991 * 3 2 1 7 7 C 1.37876 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99846 * 4.68583 * 7 2 1 9 9 C 1.50694 * 120.00150 * 184.68985 * 7 2 1 10 10 H 1.09000 * 109.47479 * 335.06047 * 9 7 2 11 11 C 1.53009 * 109.47110 * 95.05843 * 9 7 2 12 12 C 1.50697 * 109.47008 * 186.15570 * 11 9 7 13 13 O 1.20827 * 120.00311 * 0.02562 * 12 11 9 14 14 O 1.34224 * 119.99869 * 179.97438 * 12 11 9 15 15 C 1.50701 * 109.47143 * 215.05569 * 9 7 2 16 16 C 1.38274 * 119.98401 * 120.00231 * 15 9 7 17 17 C 1.38227 * 120.04773 * 179.97438 * 16 15 9 18 18 C 1.38219 * 120.02869 * 359.97438 * 17 16 15 19 19 C 1.38436 * 119.97013 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02372 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.99102 * 299.98262 * 15 9 7 22 22 H 0.96998 * 120.00291 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46785 * 306.15905 * 11 9 7 24 24 H 1.09006 * 109.46983 * 66.15960 * 11 9 7 25 25 H 0.96702 * 117.00030 * 180.02562 * 14 12 11 26 26 H 1.07992 * 119.97222 * 359.70377 * 16 15 9 27 27 H 1.07995 * 119.98225 * 179.97438 * 17 16 15 28 28 H 1.07995 * 120.01100 * 179.97438 * 18 17 16 29 29 H 1.07997 * 120.00804 * 0.03849 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3957 2.6820 0.5869 6 1 3.4872 1.4745 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4673 -2.1278 -0.0774 9 6 3.5077 -1.1962 0.1062 10 1 3.8995 -0.2478 -0.2614 11 6 3.9149 -1.3834 1.5691 12 6 5.4091 -1.2349 1.6976 13 8 6.0795 -1.0026 0.7196 14 8 5.9950 -1.3596 2.8988 15 6 4.0683 -2.3253 -0.7197 16 6 4.9395 -2.0550 -1.7589 17 6 5.4549 -3.0896 -2.5169 18 6 5.1003 -4.3958 -2.2364 19 6 4.2282 -4.6675 -1.1962 20 9 3.8813 -5.9439 -0.9208 21 6 3.7120 -3.6302 -0.4379 22 1 -0.4850 0.8400 0.0004 23 1 3.4207 -0.6304 2.1830 24 1 3.6185 -2.3773 1.9045 25 1 6.9559 -1.2557 2.9314 26 1 5.2139 -1.0345 -1.9812 27 1 6.1348 -2.8773 -3.3286 28 1 5.5028 -5.2039 -2.8291 29 1 3.0313 -3.8410 0.3737 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:39 Heat of formation + Delta-G solvation = -124.840435 kcal Electronic energy + Delta-G solvation = -16759.863041 eV Core-core repulsion = 13754.953623 eV Total energy + Delta-G solvation = -3004.909418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.39250 -39.88801 -38.44627 -35.75572 -34.37885 -31.95429 -29.93925 -29.29517 -26.54979 -23.18988 -22.11421 -21.39296 -19.51027 -17.74561 -17.10434 -16.78895 -15.75365 -15.61207 -15.37763 -15.33723 -15.06605 -14.36051 -13.38742 -13.31689 -12.93152 -12.55742 -12.51125 -12.11771 -11.49958 -11.43674 -11.12367 -11.05243 -10.94981 -10.67339 -10.21319 -9.95784 -9.80786 -9.43472 -8.74290 -8.28782 -7.96407 -6.28400 -4.31357 1.80202 1.86526 2.74936 3.16833 3.26123 3.28266 3.60959 4.23218 4.26198 4.78653 5.06095 5.30359 5.36003 5.62844 5.74160 5.84070 5.97619 6.04972 6.15068 6.45933 6.56562 6.63510 6.74091 6.79128 6.92047 6.94675 7.31982 7.47727 7.54955 8.26487 8.39131 8.77891 9.31222 10.83127 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.010366 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.834733 B = 2700.525312 C = 3322.953882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.079 3.921 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.059 3.941 10 H 0.054 0.946 11 C -0.108 4.108 12 C 0.467 3.533 13 O -0.515 6.515 14 O -0.527 6.527 15 C -0.001 4.001 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.179 4.179 19 C 0.086 3.914 20 F -0.151 7.151 21 C -0.150 4.150 22 H 0.268 0.732 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.396 0.604 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 -3.428 0.879 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.040 3.960 10 H 0.072 0.928 11 C -0.146 4.146 12 C 0.311 3.689 13 O -0.403 6.403 14 O -0.338 6.338 15 C -0.001 4.001 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.198 4.198 19 C 0.067 3.933 20 F -0.130 7.130 21 C -0.169 4.169 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.253 0.747 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.746 -3.336 0.595 10.318 hybrid contribution 0.937 0.745 0.034 1.197 sum 10.683 -2.591 0.629 11.010 Atomic orbital electron populations 1.69876 1.06277 1.27501 1.48385 1.25058 0.94740 0.98958 0.93745 0.86937 0.80135 0.83685 0.79393 1.19640 1.21126 1.18972 1.20857 0.87243 0.95276 1.51738 0.89891 1.18200 0.96942 0.93180 0.87661 0.92795 1.22236 0.84350 1.05044 1.02950 1.24591 0.93147 0.71578 0.79624 1.90650 1.66103 1.44681 1.38873 1.84643 1.28278 1.84696 1.36225 1.20069 0.91398 0.94089 0.94560 1.21083 0.97333 0.99140 0.95761 1.20854 0.99622 0.91857 0.99336 1.20862 1.01745 0.97881 0.99319 1.17713 0.99283 0.78413 0.97885 1.91433 1.91170 1.36924 1.93435 1.21007 1.02138 0.91849 1.01865 0.92144 0.87928 0.88309 0.74676 0.86085 0.86066 0.85982 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.96 55.43 0.77 -24.43 15 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.87 20.12 26.98 -169.99 -4.59 15.53 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.26 -5.86 6.83 56.52 0.39 -5.47 15 7 C -0.51 -13.16 8.63 -34.44 -0.30 -13.46 15 8 H 0.08 2.31 7.64 -52.48 -0.40 1.91 15 9 C 0.06 1.30 1.26 -92.92 -0.12 1.18 15 10 H 0.05 1.23 4.81 -51.93 -0.25 0.98 15 11 C -0.11 -2.07 5.17 -27.88 -0.14 -2.21 15 12 C 0.47 8.40 8.08 36.00 0.29 8.69 15 13 O -0.52 -10.26 15.03 -18.75 -0.28 -10.54 15 14 O -0.53 -7.62 13.42 -39.24 -0.53 -8.14 15 15 C 0.00 -0.02 3.78 -104.63 -0.40 -0.41 15 16 C -0.11 -2.19 8.69 -39.57 -0.34 -2.53 15 17 C -0.10 -1.62 10.04 -39.59 -0.40 -2.02 15 18 C -0.18 -2.96 10.03 -39.52 -0.40 -3.35 15 19 C 0.09 1.58 7.30 -39.42 -0.29 1.29 15 20 F -0.15 -2.71 17.27 2.25 0.04 -2.67 15 21 C -0.15 -2.95 8.51 -39.52 -0.34 -3.29 15 22 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 23 H 0.10 1.95 8.14 -51.93 -0.42 1.53 15 24 H 0.10 1.76 7.19 -51.93 -0.37 1.39 15 25 H 0.40 3.85 9.10 45.56 0.41 4.27 15 26 H 0.12 2.23 7.94 -52.49 -0.42 1.82 15 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 28 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.13 2.56 7.46 -52.49 -0.39 2.17 15 LS Contribution 261.39 15.07 3.94 3.94 Total: -1.00 -29.52 261.39 -5.00 -34.52 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -1.84 Total: 5.89 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.52 Total: -14.09 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.77 Total: -24.43 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.81 Total: -18.68 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.59 Total: 15.53 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.52 -5.00 -34.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.319 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds