Wall clock time and date at job start Mon Mar 30 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47183 * 264.78171 * 3 2 1 5 5 H 1.48505 * 109.46630 * 24.78240 * 3 2 1 6 6 H 1.48498 * 109.46855 * 144.77991 * 3 2 1 7 7 C 1.37876 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99846 * 4.68583 * 7 2 1 9 9 C 1.50694 * 120.00150 * 184.68985 * 7 2 1 10 10 H 1.09000 * 109.47479 * 335.06047 * 9 7 2 11 11 C 1.53009 * 109.47110 * 95.05843 * 9 7 2 12 12 C 1.50697 * 109.47008 * 186.15570 * 11 9 7 13 13 O 1.20827 * 120.00311 * 0.02562 * 12 11 9 14 14 O 1.34224 * 119.99869 * 179.97438 * 12 11 9 15 15 C 1.50701 * 109.47143 * 215.05569 * 9 7 2 16 16 C 1.38274 * 119.98401 * 120.00231 * 15 9 7 17 17 C 1.38227 * 120.04773 * 179.97438 * 16 15 9 18 18 C 1.38219 * 120.02869 * 359.97438 * 17 16 15 19 19 C 1.38436 * 119.97013 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02372 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.99102 * 299.98262 * 15 9 7 22 22 H 0.96998 * 120.00291 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46785 * 306.15905 * 11 9 7 24 24 H 1.09006 * 109.46983 * 66.15960 * 11 9 7 25 25 H 0.96702 * 117.00030 * 180.02562 * 14 12 11 26 26 H 1.07992 * 119.97222 * 359.70377 * 16 15 9 27 27 H 1.07995 * 119.98225 * 179.97438 * 17 16 15 28 28 H 1.07995 * 120.01100 * 179.97438 * 18 17 16 29 29 H 1.07997 * 120.00804 * 0.03849 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3957 2.6820 0.5869 6 1 3.4872 1.4745 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4673 -2.1278 -0.0774 9 6 3.5077 -1.1962 0.1062 10 1 3.8995 -0.2478 -0.2614 11 6 3.9149 -1.3834 1.5691 12 6 5.4091 -1.2349 1.6976 13 8 6.0795 -1.0026 0.7196 14 8 5.9950 -1.3596 2.8988 15 6 4.0683 -2.3253 -0.7197 16 6 4.9395 -2.0550 -1.7589 17 6 5.4549 -3.0896 -2.5169 18 6 5.1003 -4.3958 -2.2364 19 6 4.2282 -4.6675 -1.1962 20 9 3.8813 -5.9439 -0.9208 21 6 3.7120 -3.6302 -0.4379 22 1 -0.4850 0.8400 0.0004 23 1 3.4207 -0.6304 2.1830 24 1 3.6185 -2.3773 1.9045 25 1 6.9559 -1.2557 2.9314 26 1 5.2139 -1.0345 -1.9812 27 1 6.1348 -2.8773 -3.3286 28 1 5.5028 -5.2039 -2.8291 29 1 3.0313 -3.8410 0.3737 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:39 Heat of formation + Delta-G solvation = -143.180474 kcal Electronic energy + Delta-G solvation = -16760.658325 eV Core-core repulsion = 13754.953623 eV Total energy + Delta-G solvation = -3005.704702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.81557 -41.30548 -39.86684 -37.08703 -36.04999 -33.85089 -31.36687 -30.74923 -28.33434 -24.84124 -23.55358 -22.80685 -21.07282 -19.32316 -18.73982 -18.29117 -17.28456 -17.00485 -16.79157 -16.74355 -16.49297 -16.21274 -15.00961 -14.72446 -14.44747 -14.28156 -13.91570 -13.66237 -13.15172 -12.93744 -12.70530 -12.59300 -12.40623 -12.26302 -11.84045 -11.67524 -11.41126 -11.25350 -10.74967 -9.72564 -9.41928 -8.32469 -6.38747 0.36283 0.45664 1.32976 1.34856 1.38273 1.45918 2.27990 2.31813 2.80690 3.09375 3.38655 3.91212 3.96179 4.21894 4.27609 4.41947 4.55223 4.58605 4.65863 4.96550 5.05725 5.21293 5.25876 5.29970 5.48522 5.50617 5.69846 5.86323 6.10493 6.27691 6.69797 7.12929 7.27087 8.83008 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.010366 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.834733 B = 2700.525312 C = 3322.953882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.062 3.938 10 H 0.047 0.953 11 C -0.110 4.110 12 C 0.478 3.522 13 O -0.534 6.534 14 O -0.515 6.515 15 C -0.024 4.024 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.168 4.168 19 C 0.075 3.925 20 F -0.151 7.151 21 C -0.166 4.166 22 H 0.269 0.731 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.422 0.578 26 H 0.124 0.876 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.835 -3.472 0.430 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.043 3.957 10 H 0.065 0.935 11 C -0.148 4.148 12 C 0.322 3.678 13 O -0.424 6.424 14 O -0.329 6.329 15 C -0.024 4.024 16 C -0.147 4.147 17 C -0.105 4.105 18 C -0.187 4.187 19 C 0.056 3.944 20 F -0.130 7.130 21 C -0.185 4.185 22 H 0.078 0.922 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.283 0.717 26 H 0.142 0.858 27 H 0.179 0.821 28 H 0.175 0.825 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.410 -3.394 0.172 12.867 hybrid contribution 0.183 0.613 0.184 0.666 sum 12.592 -2.781 0.356 12.901 Atomic orbital electron populations 1.70009 1.08043 1.28346 1.51037 1.25791 0.95302 1.02380 0.93748 0.86004 0.79433 0.79535 0.79670 1.19340 1.20935 1.17187 1.20997 0.89483 0.93719 1.50471 0.93591 1.18038 0.94262 0.93679 0.89705 0.93517 1.21946 0.86220 1.05629 1.00979 1.23977 0.92385 0.71279 0.80184 1.90646 1.66349 1.45706 1.39725 1.84549 1.30498 1.83903 1.33939 1.19986 0.93086 0.93764 0.95606 1.21273 0.97454 1.00247 0.95727 1.21264 0.99009 0.90950 0.99320 1.21272 1.00104 0.99061 0.98213 1.17875 0.99888 0.78091 0.98509 1.91431 1.91270 1.36730 1.93527 1.20986 1.02698 0.92341 1.02459 0.92153 0.87911 0.87551 0.71738 0.85836 0.82059 0.82517 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 13.96 21.45 0.30 -54.89 15 2 C 0.03 1.47 5.47 84.65 0.46 1.93 15 3 Si 0.93 41.61 26.98 68.60 1.85 43.47 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.25 -10.31 6.83 99.48 0.68 -9.63 15 7 C -0.51 -26.89 8.63 25.60 0.22 -26.67 15 8 H 0.05 2.70 7.64 -2.91 -0.02 2.68 15 9 C 0.06 2.73 1.26 -12.28 -0.02 2.72 15 10 H 0.05 2.10 4.81 -2.39 -0.01 2.09 15 11 C -0.11 -4.15 5.17 29.85 0.15 -4.00 15 12 C 0.48 16.23 8.08 71.24 0.58 16.81 15 13 O -0.53 -20.14 15.03 21.96 0.33 -19.81 15 14 O -0.52 -13.37 13.42 -51.36 -0.69 -14.06 15 15 C -0.02 -0.98 3.78 -19.87 -0.08 -1.06 15 16 C -0.13 -4.66 8.69 22.28 0.19 -4.47 15 17 C -0.09 -2.57 10.04 22.26 0.22 -2.35 15 18 C -0.17 -4.97 10.03 22.31 0.22 -4.75 15 19 C 0.08 2.66 7.30 22.37 0.16 2.82 15 20 F -0.15 -5.23 17.27 44.97 0.78 -4.45 15 21 C -0.17 -6.55 8.51 22.31 0.19 -6.36 15 22 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 23 H 0.10 3.84 8.14 -2.39 -0.02 3.82 15 24 H 0.11 3.81 7.19 -2.38 -0.02 3.79 15 25 H 0.42 6.67 9.10 -74.06 -0.67 6.00 15 26 H 0.12 4.34 7.94 -2.91 -0.02 4.32 15 27 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 28 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 29 H 0.12 4.92 7.46 -2.91 -0.02 4.89 15 Total: -1.00 -64.37 261.39 5.37 -59.00 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.49 Total: 16.12 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 2.32 Total: -25.36 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.30 Total: -54.89 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.36 Total: -33.87 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.85 Total: 43.47 kcal Total: -64.37 5.37 -59.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.182 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds