Wall clock time and date at job start Mon Mar 30 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00346 * 2 1 4 4 H 1.48503 * 109.47619 * 265.04253 * 3 2 1 5 5 H 1.48500 * 109.47154 * 25.04634 * 3 2 1 6 6 H 1.48504 * 109.47173 * 145.04226 * 3 2 1 7 7 C 1.37875 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00073 * 6.80101 * 7 2 1 9 9 C 1.50706 * 120.00216 * 186.53063 * 7 2 1 10 10 H 1.09003 * 109.46457 * 335.93900 * 9 7 2 11 11 C 1.52996 * 109.47114 * 215.94308 * 9 7 2 12 12 C 1.50697 * 109.47624 * 66.07537 * 11 9 7 13 13 O 1.20825 * 119.99693 * 6.27288 * 12 11 9 14 14 O 1.34227 * 120.00073 * 186.27449 * 12 11 9 15 15 C 1.50702 * 109.47174 * 95.93780 * 9 7 2 16 16 C 1.38264 * 119.98675 * 59.72890 * 15 9 7 17 17 C 1.38226 * 120.05144 * 179.72509 * 16 15 9 18 18 C 1.38224 * 120.02170 * 0.54775 * 17 16 15 19 19 C 1.38436 * 119.97384 * 359.72873 * 18 17 16 20 20 F 1.35099 * 120.02518 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.98474 * 240.00281 * 15 9 7 22 22 H 0.97008 * 119.99514 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46615 * 186.07777 * 11 9 7 24 24 H 1.09008 * 109.46925 * 306.07396 * 11 9 7 25 25 H 0.96703 * 116.99590 * 184.77866 * 14 12 11 26 26 H 1.08002 * 119.97430 * 359.97438 * 16 15 9 27 27 H 1.07993 * 119.98916 * 180.27292 * 17 16 15 28 28 H 1.07997 * 120.01574 * 179.70461 * 18 17 16 29 29 H 1.08003 * 120.01214 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6016 1.9859 -1.3948 5 1 1.3983 2.6805 0.5927 6 1 3.4905 1.4725 0.8022 7 6 2.0044 -1.1941 -0.0005 8 1 1.4701 -2.1260 -0.1117 9 6 3.5042 -1.1986 0.1479 10 1 3.9044 -0.2387 -0.1788 11 6 4.0982 -2.3175 -0.7100 12 6 3.8658 -2.0108 -2.1670 13 8 3.3871 -0.9501 -2.4922 14 8 4.1905 -2.9159 -3.1035 15 6 3.8653 -1.4278 1.5930 16 6 3.4581 -2.5843 2.2319 17 6 3.7934 -2.7986 3.5557 18 6 4.5266 -1.8513 4.2454 19 6 4.9299 -0.6903 3.6082 20 9 5.6470 0.2360 4.2812 21 6 4.5983 -0.4794 2.2804 22 1 -0.4850 0.8402 0.0004 23 1 5.1691 -2.3909 -0.5205 24 1 3.6187 -3.2631 -0.4567 25 1 4.0896 -2.6475 -4.0270 26 1 2.8811 -3.3228 1.6951 27 1 3.4786 -3.7043 4.0525 28 1 4.7845 -2.0166 5.2810 29 1 4.9121 0.4262 1.7824 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106887406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:42 Heat of formation + Delta-G solvation = -121.884271 kcal Electronic energy + Delta-G solvation = -16661.222191 eV Core-core repulsion = 13656.440962 eV Total energy + Delta-G solvation = -3004.781229 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.44788 -39.61109 -38.52822 -35.59387 -34.20848 -31.85086 -30.19016 -29.15998 -26.36920 -23.18081 -22.22908 -21.29921 -19.41069 -17.46116 -17.27979 -16.53688 -15.86815 -15.61787 -15.39512 -15.13447 -15.08415 -14.23578 -13.56757 -13.08268 -12.63255 -12.59353 -12.42410 -12.24364 -11.76411 -11.29440 -11.14993 -10.84559 -10.78164 -10.60318 -10.06278 -9.79185 -9.65861 -9.35075 -8.55932 -8.32735 -7.99943 -6.14617 -4.15049 1.75474 1.82285 3.01663 3.33512 3.38744 3.44684 3.71678 4.21077 4.43436 4.74848 5.15709 5.31414 5.38033 5.72942 5.74490 5.83612 5.86057 5.97691 6.05125 6.42989 6.45351 6.60220 6.74264 6.79025 6.96220 7.13708 7.32595 7.47216 7.60088 8.34917 8.63737 8.84441 9.48879 10.97185 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.010343 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.915883 B = 2706.508009 C = 3335.271018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.087 3.913 3 Si 0.873 3.127 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.051 3.949 10 H 0.056 0.944 11 C -0.092 4.092 12 C 0.476 3.524 13 O -0.488 6.488 14 O -0.534 6.534 15 C -0.011 4.011 16 C -0.113 4.113 17 C -0.097 4.097 18 C -0.180 4.180 19 C 0.089 3.911 20 F -0.152 7.152 21 C -0.168 4.168 22 H 0.265 0.735 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.398 0.602 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 -5.332 2.098 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.117 4.117 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.541 4.541 8 H 0.094 0.906 9 C 0.032 3.968 10 H 0.074 0.926 11 C -0.130 4.130 12 C 0.318 3.682 13 O -0.372 6.372 14 O -0.346 6.346 15 C -0.012 4.012 16 C -0.131 4.131 17 C -0.115 4.115 18 C -0.199 4.199 19 C 0.070 3.930 20 F -0.131 7.131 21 C -0.187 4.187 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.255 0.745 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.433 -4.982 2.447 10.945 hybrid contribution 0.215 1.359 -0.409 1.435 sum 9.647 -3.624 2.038 10.505 Atomic orbital electron populations 1.69894 1.06455 1.27283 1.48996 1.24944 0.94582 0.99100 0.93057 0.86933 0.80318 0.83541 0.79135 1.19449 1.21930 1.18577 1.20639 0.87640 0.94927 1.50850 0.90593 1.18225 0.98157 0.94582 0.85881 0.92626 1.21431 1.01652 1.03010 0.86924 1.23547 0.74181 0.81441 0.89075 1.90727 1.38484 1.25603 1.82435 1.84558 1.81852 1.48008 1.20213 1.20528 0.90038 0.91705 0.98918 1.21049 0.99581 0.98237 0.94238 1.20920 0.97513 0.98448 0.94637 1.20868 1.04045 0.94549 1.00450 1.17717 0.96336 0.87955 0.90996 1.91428 1.76092 1.65146 1.80387 1.21180 1.02743 1.01703 0.93083 0.92494 0.89844 0.88500 0.74454 0.85419 0.85893 0.85948 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 15 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 15 3 Si 0.87 22.03 27.05 -169.99 -4.60 17.43 15 4 H -0.27 -6.94 7.11 56.52 0.40 -6.54 15 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 15 6 H -0.26 -6.10 5.00 56.52 0.28 -5.82 15 7 C -0.50 -13.23 7.30 -34.44 -0.25 -13.48 15 8 H 0.08 2.14 8.06 -52.48 -0.42 1.71 15 9 C 0.05 1.10 1.32 -92.92 -0.12 0.98 15 10 H 0.06 1.28 4.58 -51.93 -0.24 1.04 15 11 C -0.09 -1.65 4.99 -27.89 -0.14 -1.79 15 12 C 0.48 9.02 8.01 36.00 0.29 9.30 15 13 O -0.49 -11.28 15.93 -18.75 -0.30 -11.57 15 14 O -0.53 -7.94 13.42 -39.25 -0.53 -8.46 15 15 C -0.01 -0.22 4.77 -104.63 -0.50 -0.72 15 16 C -0.11 -2.01 8.87 -39.58 -0.35 -2.36 15 17 C -0.10 -1.50 10.04 -39.59 -0.40 -1.90 15 18 C -0.18 -2.86 10.03 -39.51 -0.40 -3.26 15 19 C 0.09 1.60 7.30 -39.42 -0.29 1.32 15 20 F -0.15 -2.69 17.27 2.25 0.04 -2.65 15 21 C -0.17 -3.28 9.24 -39.51 -0.36 -3.65 15 22 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.10 1.60 7.62 -51.92 -0.40 1.21 15 25 H 0.40 4.20 9.10 45.56 0.41 4.61 15 26 H 0.13 2.16 7.66 -52.49 -0.40 1.76 15 27 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 29 H 0.13 2.48 6.70 -52.48 -0.35 2.13 15 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -31.90 260.48 -5.22 -37.12 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -1.92 Total: 3.48 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.62 Total: -13.18 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.83 Total: -20.04 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.60 Total: 17.43 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.90 -5.22 -37.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.763 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds