Wall clock time and date at job start Mon Mar 30 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00346 * 2 1 4 4 H 1.48503 * 109.47619 * 265.04253 * 3 2 1 5 5 H 1.48500 * 109.47154 * 25.04634 * 3 2 1 6 6 H 1.48504 * 109.47173 * 145.04226 * 3 2 1 7 7 C 1.37875 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00073 * 6.80101 * 7 2 1 9 9 C 1.50706 * 120.00216 * 186.53063 * 7 2 1 10 10 H 1.09003 * 109.46457 * 335.93900 * 9 7 2 11 11 C 1.52996 * 109.47114 * 215.94308 * 9 7 2 12 12 C 1.50697 * 109.47624 * 66.07537 * 11 9 7 13 13 O 1.20825 * 119.99693 * 6.27288 * 12 11 9 14 14 O 1.34227 * 120.00073 * 186.27449 * 12 11 9 15 15 C 1.50702 * 109.47174 * 95.93780 * 9 7 2 16 16 C 1.38264 * 119.98675 * 59.72890 * 15 9 7 17 17 C 1.38226 * 120.05144 * 179.72509 * 16 15 9 18 18 C 1.38224 * 120.02170 * 0.54775 * 17 16 15 19 19 C 1.38436 * 119.97384 * 359.72873 * 18 17 16 20 20 F 1.35099 * 120.02518 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.98474 * 240.00281 * 15 9 7 22 22 H 0.97008 * 119.99514 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46615 * 186.07777 * 11 9 7 24 24 H 1.09008 * 109.46925 * 306.07396 * 11 9 7 25 25 H 0.96703 * 116.99590 * 184.77866 * 14 12 11 26 26 H 1.08002 * 119.97430 * 359.97438 * 16 15 9 27 27 H 1.07993 * 119.98916 * 180.27292 * 17 16 15 28 28 H 1.07997 * 120.01574 * 179.70461 * 18 17 16 29 29 H 1.08003 * 120.01214 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6016 1.9859 -1.3948 5 1 1.3983 2.6805 0.5927 6 1 3.4905 1.4725 0.8022 7 6 2.0044 -1.1941 -0.0005 8 1 1.4701 -2.1260 -0.1117 9 6 3.5042 -1.1986 0.1479 10 1 3.9044 -0.2387 -0.1788 11 6 4.0982 -2.3175 -0.7100 12 6 3.8658 -2.0108 -2.1670 13 8 3.3871 -0.9501 -2.4922 14 8 4.1905 -2.9159 -3.1035 15 6 3.8653 -1.4278 1.5930 16 6 3.4581 -2.5843 2.2319 17 6 3.7934 -2.7986 3.5557 18 6 4.5266 -1.8513 4.2454 19 6 4.9299 -0.6903 3.6082 20 9 5.6470 0.2360 4.2812 21 6 4.5983 -0.4794 2.2804 22 1 -0.4850 0.8402 0.0004 23 1 5.1691 -2.3909 -0.5205 24 1 3.6187 -3.2631 -0.4567 25 1 4.0896 -2.6475 -4.0270 26 1 2.8811 -3.3228 1.6951 27 1 3.4786 -3.7043 4.0525 28 1 4.7845 -2.0166 5.2810 29 1 4.9121 0.4262 1.7824 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106887406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:41 Heat of formation + Delta-G solvation = -142.895450 kcal Electronic energy + Delta-G solvation = -16662.133304 eV Core-core repulsion = 13656.440962 eV Total energy + Delta-G solvation = -3005.692342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.81573 -41.10352 -39.93178 -37.01655 -35.88056 -33.81631 -31.56642 -30.55011 -28.17463 -24.86322 -23.59665 -22.69928 -20.98130 -19.22712 -18.88489 -17.97679 -17.32726 -17.02804 -16.84299 -16.58661 -16.50782 -16.14890 -14.97181 -14.82175 -14.26249 -14.07897 -13.96422 -13.76675 -13.18709 -12.97652 -12.76781 -12.51026 -12.30282 -12.13754 -11.85864 -11.56756 -11.32092 -11.18285 -10.65720 -9.72608 -9.40304 -8.29594 -6.28738 0.37841 0.46536 1.30016 1.37032 1.39025 1.53305 2.35511 2.39246 2.81936 3.14370 3.41927 3.95482 4.06523 4.22596 4.31784 4.46425 4.53739 4.61819 4.65550 5.03485 5.07789 5.20102 5.29128 5.35290 5.55461 5.61261 5.84848 5.85254 6.14140 6.25824 6.74011 7.27412 7.37433 8.85986 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.010343 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.915883 B = 2706.508009 C = 3335.271018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.030 3.970 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.236 1.236 7 C -0.482 4.482 8 H 0.049 0.951 9 C 0.050 3.950 10 H 0.039 0.961 11 C -0.092 4.092 12 C 0.480 3.520 13 O -0.540 6.540 14 O -0.517 6.517 15 C -0.031 4.031 16 C -0.120 4.120 17 C -0.084 4.084 18 C -0.167 4.167 19 C 0.077 3.923 20 F -0.152 7.152 21 C -0.184 4.184 22 H 0.261 0.739 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.420 0.580 26 H 0.133 0.867 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.640 -6.973 3.553 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.168 4.168 3 Si 0.742 3.258 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.159 1.159 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.031 3.969 10 H 0.058 0.942 11 C -0.129 4.129 12 C 0.324 3.676 13 O -0.428 6.428 14 O -0.331 6.331 15 C -0.031 4.031 16 C -0.139 4.139 17 C -0.102 4.102 18 C -0.185 4.185 19 C 0.058 3.942 20 F -0.131 7.131 21 C -0.203 4.203 22 H 0.070 0.930 23 H 0.139 0.861 24 H 0.131 0.869 25 H 0.280 0.720 26 H 0.151 0.849 27 H 0.181 0.819 28 H 0.174 0.826 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.417 -6.657 3.894 13.778 hybrid contribution -0.289 1.695 -0.859 1.922 sum 11.128 -4.962 3.035 12.557 Atomic orbital electron populations 1.70013 1.07887 1.27510 1.52864 1.25598 0.95041 1.02023 0.94096 0.86242 0.80309 0.80603 0.78630 1.20746 1.22441 1.15912 1.20878 0.90122 0.93158 1.47789 0.93316 1.18114 0.95074 0.95486 0.88216 0.94237 1.21404 1.03851 1.01920 0.85721 1.23750 0.72920 0.80877 0.90064 1.90724 1.41052 1.27764 1.83303 1.84491 1.80800 1.46429 1.21400 1.20247 0.92137 0.93241 0.97523 1.21227 0.99484 0.97609 0.95535 1.21332 0.95828 0.99522 0.93497 1.21291 1.02266 0.93105 1.01862 1.17871 0.96797 0.88862 0.90660 1.91427 1.76128 1.65365 1.80206 1.21167 1.03667 1.01415 0.94080 0.92960 0.86147 0.86889 0.72003 0.84950 0.81863 0.82610 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.96 21.45 0.30 -58.67 15 2 C 0.03 1.77 5.47 84.65 0.46 2.23 15 3 Si 0.92 46.45 27.05 68.60 1.86 48.30 15 4 H -0.28 -14.68 7.11 99.48 0.71 -13.98 15 5 H -0.30 -15.11 7.11 99.48 0.71 -14.41 15 6 H -0.24 -10.82 5.00 99.48 0.50 -10.32 15 7 C -0.48 -25.62 7.30 25.60 0.19 -25.44 15 8 H 0.05 2.80 8.06 -2.91 -0.02 2.77 15 9 C 0.05 2.14 1.32 -12.28 -0.02 2.12 15 10 H 0.04 1.81 4.58 -2.39 -0.01 1.80 15 11 C -0.09 -3.09 4.99 29.85 0.15 -2.94 15 12 C 0.48 17.57 8.01 71.24 0.57 18.14 15 13 O -0.54 -25.03 15.93 21.97 0.35 -24.68 15 14 O -0.52 -14.15 13.42 -51.39 -0.69 -14.84 15 15 C -0.03 -1.17 4.77 -19.87 -0.09 -1.27 15 16 C -0.12 -3.94 8.87 22.27 0.20 -3.74 15 17 C -0.08 -2.22 10.04 22.26 0.22 -1.99 15 18 C -0.17 -4.55 10.03 22.31 0.22 -4.33 15 19 C 0.08 2.57 7.30 22.37 0.16 2.73 15 20 F -0.15 -5.05 17.27 44.97 0.78 -4.27 15 21 C -0.18 -6.89 9.24 22.31 0.21 -6.68 15 22 H 0.26 15.67 8.31 -92.70 -0.77 14.89 15 23 H 0.12 3.20 8.14 -2.39 -0.02 3.18 15 24 H 0.11 3.46 7.62 -2.38 -0.02 3.44 15 25 H 0.42 7.89 9.10 -74.06 -0.67 7.22 15 26 H 0.13 4.15 7.66 -2.91 -0.02 4.13 15 27 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 28 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 29 H 0.12 4.49 6.70 -2.91 -0.02 4.47 15 Total: -1.00 -71.07 260.48 5.17 -65.90 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.31 Total: 9.42 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 2.27 Total: -21.16 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.34 Total: -39.53 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.78 Total: -4.27 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.86 Total: 48.30 kcal Total: -71.07 5.17 -65.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106887406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.998 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds