Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35751 * 116.99948 * 2 1 4 4 C 1.39130 * 119.84811 * 359.97438 * 3 2 1 5 5 C 1.36525 * 120.30241 * 180.02562 * 4 3 2 6 6 C 1.40492 * 119.97869 * 0.02562 * 5 4 3 7 7 C 1.46153 * 120.14750 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.00009 * 179.97438 * 7 6 5 9 9 C 1.38784 * 120.00122 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00212 * 0.02562 * 9 8 7 11 11 C 1.40584 * 120.00095 * 179.72375 * 9 8 7 12 12 N 1.30596 * 120.00145 * 180.27634 * 11 9 8 13 13 Si 1.86800 * 120.00019 * 0.27907 * 11 9 8 14 14 H 1.48501 * 109.47483 * 89.99551 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00065 * 13 11 9 16 16 H 1.48507 * 109.46904 * 329.99888 * 13 11 9 17 17 C 1.40485 * 119.70187 * 0.24799 * 6 5 4 18 18 C 1.37657 * 119.69946 * 359.49353 * 17 6 5 19 19 Cl 1.73602 * 119.99169 * 180.25111 * 18 17 6 20 20 H 1.09001 * 109.46890 * 60.00208 * 1 2 3 21 21 H 1.09000 * 109.46479 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46706 * 300.00112 * 1 2 3 23 23 H 1.07997 * 119.85250 * 0.05233 * 4 3 2 24 24 H 1.07998 * 120.01307 * 180.02562 * 5 4 3 25 25 H 1.08002 * 120.00325 * 0.02562 * 7 6 5 26 26 H 1.08001 * 120.00199 * 359.97438 * 8 7 6 27 27 H 0.96996 * 119.99826 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.15159 * 179.74948 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2844 2.3744 -0.0005 5 6 1.8946 3.5957 -0.0011 6 6 3.2970 3.6798 -0.0016 7 6 3.9540 4.9854 -0.0028 8 6 5.3343 5.0646 -0.0028 9 6 5.9582 6.3043 -0.0044 10 1 5.3656 7.2072 -0.0052 11 6 7.3618 6.3849 0.0015 12 7 7.9488 7.5515 0.0054 13 14 8.3870 4.8234 0.0036 14 1 8.6643 4.4114 -1.3959 15 1 9.6693 5.0741 0.7092 16 1 7.6421 3.7432 0.6992 17 6 4.0649 2.5035 -0.0069 18 6 3.4364 1.2787 -0.0009 19 17 4.3780 -0.1798 -0.0008 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2062 2.3122 -0.0001 24 1 1.2994 4.4969 -0.0011 25 1 3.3613 5.8882 -0.0028 26 1 5.9271 4.1618 -0.0015 27 1 8.9172 7.6070 0.0091 28 1 5.1434 2.5597 -0.0114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106889266.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -28.833976 kcal Electronic energy + Delta-G solvation = -13832.845341 eV Core-core repulsion = 11260.435451 eV Total energy + Delta-G solvation = -2572.409890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38662 -36.95708 -35.81662 -34.55658 -32.22670 -30.23846 -29.17338 -27.14826 -24.79986 -22.04442 -21.42442 -18.80967 -18.00588 -17.53632 -15.75388 -15.34549 -15.09362 -14.86936 -13.92916 -13.43035 -13.39726 -12.91299 -12.70223 -12.34825 -11.70845 -11.66461 -11.35978 -11.09139 -10.75405 -10.62429 -10.49057 -10.46764 -10.06869 -9.95167 -9.61346 -8.73136 -8.18511 -7.39190 -7.14555 -4.53139 1.85353 1.97339 2.77330 2.79520 2.87275 2.92156 3.40126 3.59893 3.76277 4.49518 5.15726 5.23334 5.35120 5.36454 5.61466 5.71157 6.07081 6.12631 6.22158 6.38041 6.61258 6.64127 6.91324 7.09788 7.25996 7.56004 7.63510 7.86784 7.95803 8.08962 8.50695 8.62660 9.60108 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.006347 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.058285 B = 4410.776640 C = 5212.684964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.317 6.317 3 C 0.034 3.966 4 C -0.161 4.161 5 C -0.149 4.149 6 C 0.044 3.956 7 C -0.393 4.393 8 C 0.036 3.964 9 C -0.391 4.391 10 H 0.093 0.907 11 C 0.072 3.928 12 N -0.775 5.775 13 Si 0.906 3.094 14 H -0.256 1.256 15 H -0.271 1.271 16 H -0.244 1.244 17 C -0.160 4.160 18 C -0.022 4.022 19 Cl -0.090 7.090 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.295 0.705 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -9.038 -0.011 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.232 6.232 3 C -0.011 4.011 4 C -0.180 4.180 5 C -0.167 4.167 6 C 0.043 3.957 7 C -0.414 4.414 8 C 0.014 3.986 9 C -0.417 4.417 10 H 0.111 0.889 11 C -0.153 4.153 12 N -0.395 5.395 13 Si 0.728 3.272 14 H -0.180 1.180 15 H -0.196 1.196 16 H -0.167 1.167 17 C -0.179 4.179 18 C -0.049 4.049 19 Cl -0.062 7.062 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.508 -9.104 -0.009 10.640 hybrid contribution 0.331 -0.369 0.002 0.496 sum -5.176 -9.473 -0.007 10.795 Atomic orbital electron populations 1.22866 0.79863 1.02754 1.00722 1.85990 1.19968 1.26904 1.90290 1.18343 0.90025 0.84389 1.08306 1.20596 0.98653 0.92080 1.06622 1.20699 0.94271 0.96178 1.05601 1.18918 0.91755 0.93079 0.91920 1.20810 0.93128 0.92162 1.35301 1.20793 0.94246 0.95028 0.88555 1.19817 0.91276 0.95694 1.34865 0.88874 1.26738 0.99365 0.98576 0.90613 1.69517 1.13255 1.26659 1.30117 0.86241 0.78651 0.81497 0.80774 1.18012 1.19568 1.16725 1.20899 0.99757 0.89380 1.07838 1.19976 0.88113 0.87196 1.09637 1.98294 1.72821 1.37761 1.97295 0.93368 0.89175 0.93378 0.86457 0.86692 0.88952 0.90324 0.89366 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.80 101.05 0.99 1.39 15 2 O -0.32 -5.40 9.94 -18.96 -0.19 -5.59 15 3 C 0.03 0.64 6.70 -38.86 -0.26 0.38 15 4 C -0.16 -2.85 8.96 -39.87 -0.36 -3.21 15 5 C -0.15 -2.90 9.75 -39.35 -0.38 -3.28 15 6 C 0.04 0.97 5.88 -105.03 -0.62 0.35 15 7 C -0.39 -9.26 9.68 -36.40 -0.35 -9.61 15 8 C 0.04 0.85 8.30 -39.37 -0.33 0.52 15 9 C -0.39 -9.76 9.61 -38.50 -0.37 -10.13 15 10 H 0.09 2.47 8.06 -52.49 -0.42 2.05 15 11 C 0.07 1.68 5.53 -17.19 -0.10 1.58 15 12 N -0.77 -18.48 13.92 55.58 0.77 -17.71 15 13 Si 0.91 17.75 27.47 -169.99 -4.67 13.08 15 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 15 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 16 H -0.24 -4.79 6.36 56.52 0.36 -4.43 15 17 C -0.16 -3.41 9.21 -38.95 -0.36 -3.77 15 18 C -0.02 -0.45 6.33 -39.40 -0.25 -0.70 15 19 Cl -0.09 -1.64 28.49 -51.86 -1.48 -3.12 15 20 H 0.05 0.53 7.65 -51.93 -0.40 0.13 15 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.53 7.65 -51.93 -0.40 0.13 15 23 H 0.12 1.70 6.26 -52.49 -0.33 1.37 15 24 H 0.12 2.04 8.06 -52.49 -0.42 1.61 15 25 H 0.09 2.19 8.06 -52.49 -0.42 1.76 15 26 H 0.08 1.79 3.31 -52.49 -0.17 1.62 15 27 H 0.30 6.24 8.29 -40.82 -0.34 5.90 15 28 H 0.13 2.65 6.17 -52.49 -0.32 2.33 15 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -25.62 261.80 -6.49 -32.11 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -2.49 Total: 3.74 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.38 Total: -26.46 kcal Atomic # 7 Polarization: -18.48 SS G_CDS: 0.77 Total: -17.71 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.19 Total: -5.59 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -4.67 Total: 13.08 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.48 Total: -3.12 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.62 -6.49 -32.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106889266.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.276 kcal (2) G-P(sol) polarization free energy of solvation -25.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds