Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35751 * 116.99948 * 2 1 4 4 C 1.39130 * 119.84811 * 359.97438 * 3 2 1 5 5 C 1.36525 * 120.30241 * 180.02562 * 4 3 2 6 6 C 1.40492 * 119.97869 * 0.02562 * 5 4 3 7 7 C 1.46153 * 120.14750 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.00009 * 179.97438 * 7 6 5 9 9 C 1.38784 * 120.00122 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00212 * 0.02562 * 9 8 7 11 11 C 1.40584 * 120.00095 * 179.72375 * 9 8 7 12 12 N 1.30596 * 120.00145 * 180.27634 * 11 9 8 13 13 Si 1.86800 * 120.00019 * 0.27907 * 11 9 8 14 14 H 1.48501 * 109.47483 * 89.99551 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00065 * 13 11 9 16 16 H 1.48507 * 109.46904 * 329.99888 * 13 11 9 17 17 C 1.40485 * 119.70187 * 0.24799 * 6 5 4 18 18 C 1.37657 * 119.69946 * 359.49353 * 17 6 5 19 19 Cl 1.73602 * 119.99169 * 180.25111 * 18 17 6 20 20 H 1.09001 * 109.46890 * 60.00208 * 1 2 3 21 21 H 1.09000 * 109.46479 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46706 * 300.00112 * 1 2 3 23 23 H 1.07997 * 119.85250 * 0.05233 * 4 3 2 24 24 H 1.07998 * 120.01307 * 180.02562 * 5 4 3 25 25 H 1.08002 * 120.00325 * 0.02562 * 7 6 5 26 26 H 1.08001 * 120.00199 * 359.97438 * 8 7 6 27 27 H 0.96996 * 119.99826 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.15159 * 179.74948 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2844 2.3744 -0.0005 5 6 1.8946 3.5957 -0.0011 6 6 3.2970 3.6798 -0.0016 7 6 3.9540 4.9854 -0.0028 8 6 5.3343 5.0646 -0.0028 9 6 5.9582 6.3043 -0.0044 10 1 5.3656 7.2072 -0.0052 11 6 7.3618 6.3849 0.0015 12 7 7.9488 7.5515 0.0054 13 14 8.3870 4.8234 0.0036 14 1 8.6643 4.4114 -1.3959 15 1 9.6693 5.0741 0.7092 16 1 7.6421 3.7432 0.6992 17 6 4.0649 2.5035 -0.0069 18 6 3.4364 1.2787 -0.0009 19 17 4.3780 -0.1798 -0.0008 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2062 2.3122 -0.0001 24 1 1.2994 4.4969 -0.0011 25 1 3.3613 5.8882 -0.0028 26 1 5.9271 4.1618 -0.0015 27 1 8.9172 7.6070 0.0091 28 1 5.1434 2.5597 -0.0114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106889266.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -42.058495 kcal Electronic energy + Delta-G solvation = -13833.418799 eV Core-core repulsion = 11260.435451 eV Total energy + Delta-G solvation = -2572.983348 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83046 -38.43284 -37.31603 -36.29214 -33.94717 -31.76526 -30.78660 -28.32804 -26.44905 -23.58145 -23.02656 -20.51241 -19.76160 -18.96406 -17.25630 -16.67119 -16.55226 -16.46367 -15.50093 -15.01375 -14.76268 -14.46640 -14.10402 -13.85476 -13.33081 -13.27905 -12.74507 -12.50077 -12.25055 -12.12670 -12.09996 -11.91848 -11.60470 -11.57934 -11.36470 -10.39200 -9.74276 -9.11835 -8.78912 -6.37397 0.24076 0.40558 1.21044 1.26684 1.28558 1.40741 1.75050 2.01123 2.50589 2.82835 3.36440 3.91971 4.13416 4.41389 4.44990 4.48358 4.54109 4.58531 4.74323 4.81905 4.94226 5.03678 5.36856 5.43856 5.63092 5.76203 5.96282 6.03982 6.25836 6.54631 6.69446 6.81389 7.93639 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.006347 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.058285 B = 4410.776640 C = 5212.684964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.056 3.944 4 C -0.158 4.158 5 C -0.140 4.140 6 C 0.014 3.986 7 C -0.402 4.402 8 C 0.029 3.971 9 C -0.433 4.433 10 H 0.055 0.945 11 C 0.038 3.962 12 N -0.814 5.814 13 Si 0.963 3.037 14 H -0.247 1.247 15 H -0.252 1.252 16 H -0.247 1.247 17 C -0.161 4.161 18 C -0.046 4.046 19 Cl -0.076 7.076 20 H 0.062 0.938 21 H 0.119 0.881 22 H 0.062 0.938 23 H 0.158 0.842 24 H 0.131 0.869 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.306 0.694 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -11.961 -0.013 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.010 3.990 4 C -0.176 4.176 5 C -0.158 4.158 6 C 0.013 3.987 7 C -0.423 4.423 8 C 0.008 3.992 9 C -0.459 4.459 10 H 0.074 0.926 11 C -0.182 4.182 12 N -0.436 5.436 13 Si 0.781 3.219 14 H -0.171 1.171 15 H -0.175 1.175 16 H -0.170 1.170 17 C -0.180 4.180 18 C -0.073 4.073 19 Cl -0.047 7.047 20 H 0.080 0.920 21 H 0.137 0.863 22 H 0.080 0.920 23 H 0.176 0.824 24 H 0.149 0.851 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.102 -12.027 -0.011 13.967 hybrid contribution 0.419 0.260 0.003 0.493 sum -6.683 -11.767 -0.008 13.532 Atomic orbital electron populations 1.23296 0.76831 1.05294 1.02017 1.86004 1.23036 1.25760 1.89575 1.18593 0.89889 0.85643 1.04831 1.20964 1.00696 0.90726 1.05259 1.20980 0.93359 0.97847 1.03639 1.19001 0.93179 0.92405 0.94113 1.20909 0.93213 0.92828 1.35355 1.20810 0.94513 0.94897 0.88948 1.19717 0.92356 0.94798 1.39058 0.92634 1.27426 0.99534 1.01537 0.89724 1.69530 1.14247 1.28235 1.31623 0.85434 0.77679 0.77516 0.81296 1.17054 1.17525 1.17024 1.20922 0.99698 0.89904 1.07472 1.20102 0.89197 0.87454 1.10586 1.98293 1.72594 1.36541 1.97257 0.91973 0.86321 0.91988 0.82411 0.85090 0.90273 0.89140 0.88229 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.80 113.37 1.11 1.48 15 2 O -0.33 -9.80 9.94 -90.76 -0.90 -10.70 15 3 C 0.06 1.91 6.70 22.74 0.15 2.06 15 4 C -0.16 -4.96 8.96 22.08 0.20 -4.76 15 5 C -0.14 -5.11 9.75 22.42 0.22 -4.89 15 6 C 0.01 0.60 5.88 -20.13 -0.12 0.48 15 7 C -0.40 -19.50 9.68 24.33 0.24 -19.27 15 8 C 0.03 1.46 8.30 22.41 0.19 1.65 15 9 C -0.43 -23.00 9.61 22.97 0.22 -22.78 15 10 H 0.06 3.23 8.06 -2.91 -0.02 3.20 15 11 C 0.04 1.86 5.53 85.45 0.47 2.34 15 12 N -0.81 -40.44 13.92 21.95 0.31 -40.13 15 13 Si 0.96 36.61 27.47 68.60 1.88 38.50 15 14 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 15 H -0.25 -8.70 7.11 99.48 0.71 -8.00 15 16 H -0.25 -9.37 6.36 99.48 0.63 -8.73 15 17 C -0.16 -6.70 9.21 22.68 0.21 -6.49 15 18 C -0.05 -1.76 6.33 22.38 0.14 -1.62 15 19 Cl -0.08 -2.58 28.49 -2.72 -0.08 -2.66 15 20 H 0.06 1.03 7.65 -2.39 -0.02 1.01 15 21 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.06 1.03 7.65 -2.38 -0.02 1.01 15 23 H 0.16 3.67 6.26 -2.91 -0.02 3.65 15 24 H 0.13 4.33 8.06 -2.91 -0.02 4.30 15 25 H 0.08 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.09 4.19 3.31 -2.91 -0.01 4.18 15 27 H 0.31 13.29 8.29 -92.71 -0.77 12.52 15 28 H 0.12 5.03 6.17 -2.91 -0.02 5.01 15 Total: -1.00 -56.74 261.80 5.34 -51.39 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.11 Total: 15.40 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 3.03 Total: -51.81 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.31 Total: -40.13 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.90 Total: -10.70 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.88 Total: 38.50 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -56.74 5.34 -51.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106889266.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -56.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds