Wall clock time and date at job start Mon Mar 30 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47202 * 269.99909 * 3 2 1 5 5 H 1.48502 * 109.47048 * 30.00172 * 3 2 1 6 6 H 1.48501 * 109.47032 * 149.99907 * 3 2 1 7 7 C 1.37878 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00293 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99939 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99899 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46857 * 180.02562 * 11 10 9 13 13 S 1.81394 * 109.46998 * 180.02562 * 12 11 10 14 14 C 1.76199 * 103.00056 * 180.02562 * 13 12 11 15 15 C 1.38975 * 120.07816 * 180.02562 * 14 13 12 16 16 C 1.38086 * 119.91892 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07752 * 359.97438 * 16 15 14 18 18 C 1.38301 * 120.16067 * 0.02562 * 17 16 15 19 19 C 1.38081 * 120.08205 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00187 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46859 * 59.99951 * 9 7 2 22 22 H 1.09002 * 109.46988 * 299.99924 * 9 7 2 23 23 H 1.08998 * 109.46708 * 60.00423 * 11 10 9 24 24 H 1.08996 * 109.47402 * 300.00479 * 11 10 9 25 25 H 1.09000 * 109.46939 * 60.00170 * 12 11 10 26 26 H 1.09004 * 109.47160 * 300.00014 * 12 11 10 27 27 H 1.07995 * 120.04427 * 359.69664 * 15 14 13 28 28 H 1.08000 * 119.96089 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.91521 * 179.97438 * 17 16 15 30 30 H 1.07996 * 119.95950 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.04201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4125 -2.6541 -0.0001 12 6 5.8070 -4.1323 -0.0009 13 16 7.6153 -4.2755 -0.0002 14 6 7.8749 -6.0183 -0.0020 15 6 9.1670 -6.5300 -0.0014 16 6 9.3667 -7.8963 -0.0022 17 6 8.2826 -8.7553 -0.0031 18 6 6.9954 -8.2496 -0.0037 19 6 6.7881 -6.8844 -0.0029 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8905 22 1 3.8752 -0.6796 -0.8895 23 1 5.8152 -2.1706 0.8899 24 1 5.8152 -2.1704 -0.8900 25 1 5.4043 -4.6154 -0.8911 26 1 5.4042 -4.6164 0.8889 27 1 10.0139 -5.8599 -0.0048 28 1 10.3705 -8.2947 -0.0022 29 1 8.4418 -9.8234 -0.0042 30 1 6.1513 -8.9232 -0.0048 31 1 5.7826 -6.4902 -0.0037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148594870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:36 Heat of formation + Delta-G solvation = -27.704581 kcal Electronic energy + Delta-G solvation = -13517.096488 eV Core-core repulsion = 11082.612373 eV Total energy + Delta-G solvation = -2434.484115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07573 -37.15745 -32.86390 -31.71890 -31.15045 -30.75394 -27.77797 -23.56478 -22.85380 -22.06562 -21.90454 -17.92275 -16.93125 -16.53500 -15.79577 -15.68367 -15.14915 -14.59636 -14.59308 -13.75865 -13.64630 -13.50587 -13.02664 -12.93965 -12.49717 -11.67921 -11.53666 -11.36389 -11.11738 -10.85280 -10.75379 -10.27910 -9.92119 -9.90706 -9.26826 -9.19238 -8.97249 -8.56791 -7.51327 -6.16773 -4.16879 1.01731 1.16306 1.34312 2.31714 3.21927 3.29150 3.30237 3.51442 4.31122 4.54919 4.65411 4.73363 4.89325 4.97343 5.14485 5.18613 5.27601 5.37449 5.51534 5.56280 5.77494 5.89121 5.93316 6.08096 6.16794 6.28949 6.51063 6.69175 6.91017 7.51365 7.87636 8.56652 8.93185 9.41521 10.96060 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.061390 B = 0.003878 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.988609 B = 7218.572614 C = 7648.812878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.170 3.830 10 O -0.378 6.378 11 C 0.076 3.924 12 C -0.104 4.104 13 S -0.110 6.110 14 C -0.078 4.078 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.133 4.133 20 H 0.268 0.732 21 H 0.006 0.994 22 H 0.002 0.998 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.486 -13.535 0.007 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.095 3.905 10 O -0.297 6.297 11 C -0.003 4.003 12 C -0.253 4.253 13 S 0.134 5.866 14 C -0.191 4.191 15 C -0.128 4.128 16 C -0.124 4.124 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.157 4.157 20 H 0.078 0.922 21 H 0.024 0.976 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.912 -12.532 0.011 22.687 hybrid contribution -0.423 0.078 -0.018 0.431 sum 18.489 -12.454 -0.007 22.292 Atomic orbital electron populations 1.69868 1.06073 1.27225 1.50003 1.24759 0.94825 0.98794 0.94492 0.86845 0.80371 0.83659 0.78876 1.19818 1.20659 1.19031 1.20863 0.88075 0.95436 1.51699 0.89901 1.20659 0.96260 0.78902 0.94689 1.87900 1.16404 1.30254 1.95183 1.21845 0.85654 0.92192 1.00629 1.23575 0.92870 1.01970 1.06838 1.85337 1.08189 1.01077 1.91986 1.21804 0.96638 0.96759 1.03903 1.20761 0.94957 0.95509 1.01523 1.21074 0.99078 0.92787 0.99424 1.21180 0.92668 0.99800 1.01442 1.21097 0.97341 0.94749 0.98742 1.21327 0.98191 0.93871 1.02310 0.92247 0.97623 0.98066 0.93173 0.93182 0.88509 0.88513 0.85529 0.85628 0.85908 0.85635 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -15.50 9.99 -34.44 -0.34 -15.84 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.25 16 9 C 0.17 4.31 4.76 36.01 0.17 4.48 16 10 O -0.38 -8.71 10.33 -35.23 -0.36 -9.07 16 11 C 0.08 1.33 5.95 37.16 0.22 1.55 16 12 C -0.10 -1.52 4.70 37.16 0.17 -1.34 16 13 S -0.11 -1.45 21.92 -107.50 -2.36 -3.81 16 14 C -0.08 -0.96 6.11 -39.04 -0.24 -1.20 16 15 C -0.10 -1.10 9.79 -39.36 -0.39 -1.49 16 16 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 17 C -0.13 -1.16 10.04 -39.53 -0.40 -1.55 16 18 C -0.10 -0.99 10.04 -39.62 -0.40 -1.39 16 19 C -0.13 -1.56 9.36 -39.37 -0.37 -1.93 16 20 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 21 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 22 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.10 1.37 7.75 -51.92 -0.40 0.97 16 26 H 0.10 1.37 7.75 -51.92 -0.40 0.97 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.48 5.88 -52.49 -0.31 1.17 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -31.46 281.72 -8.44 -39.89 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -4.01 Total: -3.18 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.06 Total: -17.98 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.36 Total: -9.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.36 Total: -3.81 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.46 -8.44 -39.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148594870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.189 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds