Wall clock time and date at job start Mon Mar 30 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47202 * 269.99909 * 3 2 1 5 5 H 1.48502 * 109.47048 * 30.00172 * 3 2 1 6 6 H 1.48501 * 109.47032 * 149.99907 * 3 2 1 7 7 C 1.37878 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00293 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99939 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99899 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46857 * 180.02562 * 11 10 9 13 13 S 1.81394 * 109.46998 * 180.02562 * 12 11 10 14 14 C 1.76199 * 103.00056 * 180.02562 * 13 12 11 15 15 C 1.38975 * 120.07816 * 180.02562 * 14 13 12 16 16 C 1.38086 * 119.91892 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07752 * 359.97438 * 16 15 14 18 18 C 1.38301 * 120.16067 * 0.02562 * 17 16 15 19 19 C 1.38081 * 120.08205 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00187 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46859 * 59.99951 * 9 7 2 22 22 H 1.09002 * 109.46988 * 299.99924 * 9 7 2 23 23 H 1.08998 * 109.46708 * 60.00423 * 11 10 9 24 24 H 1.08996 * 109.47402 * 300.00479 * 11 10 9 25 25 H 1.09000 * 109.46939 * 60.00170 * 12 11 10 26 26 H 1.09004 * 109.47160 * 300.00014 * 12 11 10 27 27 H 1.07995 * 120.04427 * 359.69664 * 15 14 13 28 28 H 1.08000 * 119.96089 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.91521 * 179.97438 * 17 16 15 30 30 H 1.07996 * 119.95950 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.04201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4125 -2.6541 -0.0001 12 6 5.8070 -4.1323 -0.0009 13 16 7.6153 -4.2755 -0.0002 14 6 7.8749 -6.0183 -0.0020 15 6 9.1670 -6.5300 -0.0014 16 6 9.3667 -7.8963 -0.0022 17 6 8.2826 -8.7553 -0.0031 18 6 6.9954 -8.2496 -0.0037 19 6 6.7881 -6.8844 -0.0029 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8905 22 1 3.8752 -0.6796 -0.8895 23 1 5.8152 -2.1706 0.8899 24 1 5.8152 -2.1704 -0.8900 25 1 5.4043 -4.6154 -0.8911 26 1 5.4042 -4.6164 0.8889 27 1 10.0139 -5.8599 -0.0048 28 1 10.3705 -8.2947 -0.0022 29 1 8.4418 -9.8234 -0.0042 30 1 6.1513 -8.9232 -0.0048 31 1 5.7826 -6.4902 -0.0037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148594870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:36 Heat of formation + Delta-G solvation = -46.524372 kcal Electronic energy + Delta-G solvation = -13517.912576 eV Core-core repulsion = 11082.612373 eV Total energy + Delta-G solvation = -2435.300202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83687 -38.88577 -35.00150 -32.98953 -31.93541 -31.77863 -29.80266 -24.72863 -24.01537 -23.63329 -23.03129 -19.17722 -18.67163 -17.84490 -17.17501 -17.02289 -16.47924 -15.99465 -15.48510 -15.13759 -15.07954 -14.57904 -14.32368 -14.15544 -13.99255 -13.14879 -13.08995 -12.54794 -12.49539 -12.40304 -12.06901 -11.85213 -11.46240 -11.26252 -10.97220 -10.75098 -10.50332 -9.96266 -8.47734 -8.40546 -6.49704 0.22448 0.29720 0.39420 1.29443 1.33006 1.35851 1.46717 2.27384 2.75006 2.92039 3.03716 3.74424 3.88837 3.90598 3.99782 4.22175 4.27435 4.47174 4.49697 4.55091 4.56051 4.68915 4.77957 4.93301 5.05031 5.29477 5.37269 5.43949 5.54742 5.84935 5.97164 6.52990 6.61819 7.14570 8.76456 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.061390 B = 0.003878 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.988609 B = 7218.572614 C = 7648.812878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.551 4.551 8 H 0.031 0.969 9 C 0.179 3.821 10 O -0.403 6.403 11 C 0.071 3.929 12 C -0.099 4.099 13 S -0.109 6.109 14 C -0.100 4.100 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.126 4.126 18 C -0.108 4.108 19 C -0.153 4.153 20 H 0.274 0.726 21 H 0.017 0.983 22 H 0.016 0.984 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.232 -13.549 -0.012 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.589 4.589 8 H 0.050 0.950 9 C 0.103 3.897 10 O -0.324 6.324 11 C -0.007 4.007 12 C -0.247 4.247 13 S 0.135 5.865 14 C -0.213 4.213 15 C -0.136 4.136 16 C -0.121 4.121 17 C -0.146 4.146 18 C -0.128 4.128 19 C -0.176 4.176 20 H 0.084 0.916 21 H 0.035 0.965 22 H 0.034 0.966 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.155 0.845 28 H 0.174 0.826 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.674 -12.583 -0.009 25.061 hybrid contribution -1.262 -0.131 -0.013 1.268 sum 20.412 -12.714 -0.021 24.048 Atomic orbital electron populations 1.70022 1.08279 1.28942 1.50712 1.25843 0.95821 1.03448 0.93267 0.85606 0.79476 0.77367 0.79920 1.18246 1.19705 1.16784 1.21147 0.90804 0.94023 1.52907 0.95026 1.20394 0.93393 0.80297 0.95574 1.87844 1.20038 1.29094 1.95385 1.22091 0.82612 0.94387 1.01657 1.23397 0.94591 0.99967 1.06730 1.85181 1.05962 1.02784 1.92604 1.21901 0.97658 0.95847 1.05918 1.21024 0.94517 0.96706 1.01382 1.21474 1.00721 0.92015 0.97938 1.21595 0.92009 1.01450 0.99595 1.21394 0.98807 0.94210 0.98371 1.21415 0.97825 0.94938 1.03463 0.91649 0.96544 0.96607 0.92093 0.92015 0.88690 0.88718 0.84499 0.82564 0.82938 0.83951 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 2 C 0.01 0.86 5.47 84.65 0.46 1.32 16 3 Si 0.96 43.05 27.47 68.60 1.88 44.94 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 7 C -0.55 -33.67 9.99 25.60 0.26 -33.41 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.18 9.00 4.76 71.24 0.34 9.34 16 10 O -0.40 -18.81 10.33 -148.98 -1.54 -20.35 16 11 C 0.07 2.43 5.95 71.98 0.43 2.86 16 12 C -0.10 -2.88 4.70 71.98 0.34 -2.54 16 13 S -0.11 -2.79 21.92 -56.49 -1.24 -4.03 16 14 C -0.10 -2.39 6.11 22.62 0.14 -2.25 16 15 C -0.11 -2.19 9.79 22.41 0.22 -1.97 16 16 C -0.10 -1.53 10.04 22.25 0.22 -1.30 16 17 C -0.13 -1.87 10.04 22.30 0.22 -1.64 16 18 C -0.11 -1.98 10.04 22.25 0.22 -1.76 16 19 C -0.15 -3.52 9.36 22.41 0.21 -3.31 16 20 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 21 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 22 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 2.76 7.75 -2.39 -0.02 2.74 16 26 H 0.09 2.76 7.75 -2.39 -0.02 2.74 16 27 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 29 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.12 2.85 5.88 -2.91 -0.02 2.83 16 Total: -1.00 -69.55 281.72 3.52 -66.03 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.06 Total: -34.67 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.54 Total: -20.35 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -1.24 Total: -4.03 kcal Total: -69.55 3.52 -66.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148594870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.504 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds