Wall clock time and date at job start Mon Mar 30 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.35905 * 116.99842 * 179.97438 * 11 10 9 13 13 C 1.38852 * 119.95809 * 359.72616 * 12 11 10 14 14 C 1.38495 * 120.27390 * 179.72638 * 13 12 11 15 15 F 1.35098 * 119.91049 * 180.29471 * 14 13 12 16 16 C 1.38177 * 120.18008 * 0.54723 * 14 13 12 17 17 C 1.39811 * 119.90836 * 359.72714 * 16 14 13 18 18 C 1.47191 * 120.13338 * 180.02562 * 17 16 14 19 19 O 1.21249 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.38402 * 119.95449 * 179.97438 * 12 11 10 21 21 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08005 * 119.86480 * 359.97369 * 13 12 11 27 27 H 1.07996 * 120.04710 * 179.75200 * 16 14 13 28 28 H 1.08005 * 120.00025 * 179.97438 * 18 17 16 29 29 H 1.07998 * 120.09452 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0021 12 6 6.0677 -3.8474 0.0027 13 6 5.3106 -5.0113 0.0080 14 6 5.9325 -6.2488 0.0029 15 9 5.1887 -7.3765 0.0020 16 6 7.3117 -6.3330 0.0040 17 6 8.0815 -5.1659 0.0045 18 6 9.5510 -5.2499 0.0051 19 8 10.0963 -6.3328 0.0056 20 6 7.4499 -3.9187 0.0033 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6803 -0.8889 24 1 3.6586 -3.1502 -0.8892 25 1 3.6580 -3.1505 0.8908 26 1 4.2322 -4.9515 0.0120 27 1 7.7945 -7.2991 0.0041 28 1 10.1435 -4.3469 0.0050 29 1 8.0388 -3.0134 0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159686497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:54 Heat of formation + Delta-G solvation = -100.211090 kcal Electronic energy + Delta-G solvation = -15650.611873 eV Core-core repulsion = 12646.770464 eV Total energy + Delta-G solvation = -3003.841409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.02173 -40.26418 -39.12680 -36.98145 -33.45733 -31.35005 -31.17642 -29.62928 -25.98260 -24.60244 -22.77400 -21.44493 -20.55897 -18.47293 -17.06933 -16.88017 -16.43638 -16.02188 -15.99246 -15.40990 -15.38358 -14.94813 -14.44183 -14.29309 -14.08287 -12.98204 -12.88563 -12.65377 -12.13186 -11.83953 -11.66385 -11.22487 -10.92024 -10.37938 -10.16718 -10.12843 -9.93376 -9.44978 -9.12491 -8.70455 -8.32709 -6.21038 -4.23166 0.30317 1.09335 2.15893 3.22336 3.29410 3.32338 3.33972 3.47858 3.82902 4.19614 4.31519 4.71934 4.81648 4.88890 5.03146 5.12635 5.14447 5.65780 5.71832 5.73318 5.88864 5.90851 6.06794 6.28488 6.46612 6.90580 7.08387 7.09848 7.47683 7.60621 8.29538 8.78937 9.38356 10.91306 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.004776 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.693829 B = 5860.912655 C = 6559.158502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.067 3.933 11 O -0.310 6.310 12 C 0.161 3.839 13 C -0.217 4.217 14 C 0.128 3.872 15 F -0.135 7.135 16 C -0.147 4.147 17 C -0.131 4.131 18 C 0.390 3.610 19 O -0.457 6.457 20 C -0.119 4.119 21 H 0.267 0.733 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.560 -7.884 0.030 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.006 4.006 11 O -0.223 6.223 12 C 0.114 3.886 13 C -0.237 4.237 14 C 0.109 3.891 15 F -0.113 7.113 16 C -0.166 4.166 17 C -0.132 4.132 18 C 0.248 3.752 19 O -0.330 6.330 20 C -0.139 4.139 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.168 0.832 27 H 0.161 0.839 28 H 0.130 0.870 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.718 -8.187 0.034 17.722 hybrid contribution -0.330 0.614 -0.023 0.697 sum 15.388 -7.573 0.011 17.151 Atomic orbital electron populations 1.69885 1.06299 1.27334 1.49783 1.24938 0.94776 0.99254 0.94013 0.86748 0.80416 0.83244 0.78787 1.20022 1.21122 1.18743 1.20811 0.88199 0.95011 1.52822 0.90716 1.19591 0.97036 0.89822 0.98068 1.23241 0.73916 1.02563 1.00907 1.86190 1.24641 1.24725 1.86697 1.18715 0.91877 0.85005 0.93023 1.21615 1.02401 0.91123 1.08523 1.17252 0.88774 0.81888 1.01203 1.91524 1.76682 1.49389 1.93726 1.21166 0.91533 0.99953 1.03929 1.20474 0.96604 0.92491 1.03644 1.24076 0.88088 0.93180 0.69881 1.90529 1.74581 1.33482 1.34375 1.20700 0.91878 0.97756 1.03517 0.92345 0.95252 0.95687 0.92088 0.92077 0.83233 0.83945 0.86972 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.75 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.08 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 15 7 C -0.53 -14.34 9.66 -34.44 -0.33 -14.68 15 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 15 9 C -0.01 -0.18 4.41 -27.88 -0.12 -0.30 15 10 C 0.07 1.26 4.68 37.16 0.17 1.43 15 11 O -0.31 -5.22 10.13 -19.44 -0.20 -5.42 15 12 C 0.16 2.29 6.68 -39.29 -0.26 2.02 15 13 C -0.22 -3.03 9.01 -39.26 -0.35 -3.38 15 14 C 0.13 1.70 7.29 -39.51 -0.29 1.41 15 15 F -0.13 -1.85 17.26 2.25 0.04 -1.81 15 16 C -0.15 -1.76 9.57 -39.02 -0.37 -2.13 15 17 C -0.13 -1.39 5.87 -105.09 -0.62 -2.01 15 18 C 0.39 3.44 11.46 34.37 0.39 3.83 15 19 O -0.46 -5.65 17.16 5.58 0.10 -5.56 15 20 C -0.12 -1.33 9.73 -38.94 -0.38 -1.71 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.03 0.67 7.20 -51.93 -0.37 0.29 15 23 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 24 H 0.06 1.10 7.67 -51.93 -0.40 0.70 15 25 H 0.06 1.10 7.64 -51.93 -0.40 0.70 15 26 H 0.15 2.09 6.27 -52.48 -0.33 1.76 15 27 H 0.14 1.62 7.64 -52.49 -0.40 1.22 15 28 H 0.11 0.52 8.06 -52.48 -0.42 0.10 15 29 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15 LS Contribution 266.96 15.07 4.02 4.02 Total: -1.00 -30.36 266.96 -4.92 -35.28 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -2.72 Total: -3.27 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.26 Total: -13.57 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.10 Total: -10.97 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.36 -4.92 -35.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159686497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.929 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds