Wall clock time and date at job start Mon Mar 30 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.35905 * 116.99842 * 179.97438 * 11 10 9 13 13 C 1.38852 * 119.95809 * 359.72616 * 12 11 10 14 14 C 1.38495 * 120.27390 * 179.72638 * 13 12 11 15 15 F 1.35098 * 119.91049 * 180.29471 * 14 13 12 16 16 C 1.38177 * 120.18008 * 0.54723 * 14 13 12 17 17 C 1.39811 * 119.90836 * 359.72714 * 16 14 13 18 18 C 1.47191 * 120.13338 * 180.02562 * 17 16 14 19 19 O 1.21249 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.38402 * 119.95449 * 179.97438 * 12 11 10 21 21 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08005 * 119.86480 * 359.97369 * 13 12 11 27 27 H 1.07996 * 120.04710 * 179.75200 * 16 14 13 28 28 H 1.08005 * 120.00025 * 179.97438 * 18 17 16 29 29 H 1.07998 * 120.09452 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0021 12 6 6.0677 -3.8474 0.0027 13 6 5.3106 -5.0113 0.0080 14 6 5.9325 -6.2488 0.0029 15 9 5.1887 -7.3765 0.0020 16 6 7.3117 -6.3330 0.0040 17 6 8.0815 -5.1659 0.0045 18 6 9.5510 -5.2499 0.0051 19 8 10.0963 -6.3328 0.0056 20 6 7.4499 -3.9187 0.0033 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6803 -0.8889 24 1 3.6586 -3.1502 -0.8892 25 1 3.6580 -3.1505 0.8908 26 1 4.2322 -4.9515 0.0120 27 1 7.7945 -7.2991 0.0041 28 1 10.1435 -4.3469 0.0050 29 1 8.0388 -3.0134 0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159686497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:53 Heat of formation + Delta-G solvation = -119.120495 kcal Electronic energy + Delta-G solvation = -15651.431846 eV Core-core repulsion = 12646.770464 eV Total energy + Delta-G solvation = -3004.661383 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.08131 -41.30190 -40.07590 -38.06405 -35.40804 -32.93212 -32.29953 -30.82767 -27.42936 -25.84770 -23.79818 -22.87971 -21.82238 -19.65228 -18.81292 -17.94108 -17.43421 -17.21608 -17.17842 -16.62419 -16.35950 -16.29939 -15.74066 -15.38362 -15.28874 -14.66893 -14.33860 -13.98895 -13.43862 -13.06026 -12.86945 -12.70828 -12.48736 -12.19115 -11.81139 -11.59457 -11.46574 -10.93184 -10.80703 -10.11429 -9.40007 -8.33847 -6.41477 -0.58892 0.08765 1.34925 1.38963 1.40566 1.52689 2.09689 2.34727 2.54773 2.94232 3.01680 3.30195 3.78042 3.81520 3.97809 4.07180 4.19652 4.20099 4.40188 4.62995 4.83454 4.91083 4.99112 5.05561 5.11211 5.31520 5.46016 5.56334 6.15554 6.27837 6.41034 6.65310 7.24025 8.81864 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.004776 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.693829 B = 5860.912655 C = 6559.158502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.539 4.539 8 H 0.039 0.961 9 C -0.006 4.006 10 C 0.081 3.919 11 O -0.316 6.316 12 C 0.136 3.864 13 C -0.227 4.227 14 C 0.113 3.887 15 F -0.143 7.143 16 C -0.146 4.146 17 C -0.128 4.128 18 C 0.404 3.596 19 O -0.494 6.494 20 C -0.097 4.097 21 H 0.269 0.731 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.736 -6.715 0.021 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.577 4.577 8 H 0.057 0.943 9 C -0.043 4.043 10 C 0.006 3.994 11 O -0.229 6.229 12 C 0.090 3.910 13 C -0.247 4.247 14 C 0.094 3.906 15 F -0.122 7.122 16 C -0.165 4.165 17 C -0.129 4.129 18 C 0.264 3.736 19 O -0.368 6.368 20 C -0.115 4.115 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.165 0.835 28 H 0.189 0.811 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.915 -7.040 0.024 20.182 hybrid contribution -1.288 0.111 -0.021 1.293 sum 17.627 -6.929 0.004 18.939 Atomic orbital electron populations 1.70037 1.08307 1.28527 1.51562 1.25942 0.95628 1.03569 0.93628 0.85635 0.79577 0.77927 0.79416 1.18967 1.20924 1.16673 1.21138 0.90807 0.93756 1.52025 0.94295 1.19442 0.94043 0.92498 0.98334 1.22791 0.75562 0.99996 1.01005 1.86102 1.22926 1.26162 1.87711 1.18971 0.93041 0.83885 0.95126 1.21602 1.02144 0.91747 1.09217 1.17359 0.89345 0.81469 1.02436 1.91499 1.77028 1.49695 1.93933 1.21391 0.91024 1.01103 1.02999 1.20867 0.98114 0.91618 1.02334 1.24769 0.86856 0.94239 0.67758 1.90545 1.74695 1.35395 1.36167 1.21031 0.90574 0.99237 1.00689 0.92170 0.94858 0.94971 0.92140 0.92163 0.84256 0.83534 0.81146 0.79952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.45 0.30 -57.05 15 2 C 0.01 0.58 5.47 84.65 0.46 1.04 15 3 Si 0.95 42.17 27.47 68.60 1.88 44.05 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 15 7 C -0.54 -29.71 9.66 25.60 0.25 -29.46 15 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 15 9 C -0.01 -0.25 4.41 29.85 0.13 -0.12 15 10 C 0.08 2.99 4.68 71.98 0.34 3.33 15 11 O -0.32 -10.08 10.13 -92.49 -0.94 -11.02 15 12 C 0.14 3.62 6.68 22.46 0.15 3.77 15 13 C -0.23 -6.31 9.01 22.48 0.20 -6.11 15 14 C 0.11 2.97 7.29 22.32 0.16 3.13 15 15 F -0.14 -4.00 17.26 44.97 0.78 -3.22 15 16 C -0.15 -3.28 9.57 22.64 0.22 -3.07 15 17 C -0.13 -2.30 5.87 -20.17 -0.12 -2.42 15 18 C 0.40 5.37 11.46 70.17 0.80 6.18 15 19 O -0.49 -10.77 17.16 -2.93 -0.05 -10.82 15 20 C -0.10 -1.80 9.73 22.69 0.22 -1.58 15 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 22 H 0.03 1.45 7.20 -2.39 -0.02 1.43 15 23 H 0.03 1.38 7.57 -2.39 -0.02 1.36 15 24 H 0.06 2.21 7.67 -2.39 -0.02 2.19 15 25 H 0.06 2.20 7.64 -2.39 -0.02 2.18 15 26 H 0.14 4.05 6.27 -2.91 -0.02 4.03 15 27 H 0.15 3.16 7.64 -2.91 -0.02 3.14 15 28 H 0.17 0.44 8.06 -2.91 -0.02 0.42 15 29 H 0.18 2.07 8.06 -2.91 -0.02 2.05 15 Total: -1.00 -67.21 266.96 5.90 -61.31 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.11 Total: 2.06 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 2.82 Total: -25.32 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.30 Total: -57.05 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.99 Total: -21.83 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -67.21 5.90 -61.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159686497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.810 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds