Wall clock time and date at job start Mon Mar 30 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38074 * 119.98670 * 2 1 4 4 C 1.38140 * 120.24847 * 180.27436 * 3 2 1 5 5 C 1.39221 * 120.21435 * 359.44301 * 4 3 2 6 6 S 1.76198 * 120.01809 * 180.29699 * 5 4 3 7 7 C 1.76202 * 100.00048 * 86.61867 * 6 5 4 8 8 H 1.08004 * 119.99792 * 3.28094 * 7 6 5 9 9 C 1.38725 * 120.00139 * 183.28082 * 7 6 5 10 10 N 1.31626 * 119.99810 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47223 * 90.00038 * 11 9 7 13 13 H 1.48498 * 109.47240 * 210.00117 * 11 9 7 14 14 H 1.48500 * 109.47098 * 330.00371 * 11 9 7 15 15 C 1.38821 * 119.96638 * 0.27677 * 5 4 3 16 16 C 1.39479 * 119.74999 * 0.02562 * 15 5 4 17 17 C 1.47744 * 120.10430 * 180.02562 * 16 15 5 18 18 O 1.21475 * 120.00160 * 173.81724 * 17 16 15 19 19 O 1.34708 * 120.00233 * 353.81134 * 17 16 15 20 20 H 1.08994 * 109.47390 * 263.34780 * 1 2 3 21 21 H 1.09002 * 109.46869 * 23.34653 * 1 2 3 22 22 H 1.09002 * 109.47330 * 143.34253 * 1 2 3 23 23 H 1.08001 * 119.86900 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.88789 * 179.71897 * 4 3 2 25 25 H 0.97007 * 119.99638 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.12920 * 179.97438 * 15 5 4 27 27 H 0.96704 * 117.00146 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1959 0.0000 4 6 3.5785 1.2022 -0.0057 5 6 4.2846 0.0024 0.0002 6 16 6.0465 0.0165 0.0008 7 6 6.3511 0.1295 1.7326 8 1 5.5251 0.1136 2.4283 9 6 7.6517 0.2388 2.2025 10 7 8.6584 0.2576 1.3546 11 14 7.9745 0.3592 4.0384 12 1 8.1499 -1.0040 4.6007 13 1 9.2068 1.1539 4.2733 14 1 6.8233 1.0235 4.7009 15 6 3.5999 -1.2052 0.0060 16 6 2.2051 -1.2099 0.0054 17 6 1.4684 -2.4905 0.0122 18 8 0.2589 -2.4949 0.1250 19 8 2.1379 -3.6534 -0.1068 20 1 -0.3634 -0.1190 1.0207 21 1 -0.3633 0.9436 -0.4073 22 1 -0.3634 -0.8244 -0.6135 23 1 1.6547 2.1299 -0.0004 24 1 4.1123 2.1410 -0.0103 25 1 9.5679 0.3336 1.6833 26 1 4.1450 -2.1375 0.0102 27 1 1.6126 -4.4653 -0.0975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160431275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:49 Heat of formation + Delta-G solvation = -76.232770 kcal Electronic energy + Delta-G solvation = -13988.416507 eV Core-core repulsion = 11415.994957 eV Total energy + Delta-G solvation = -2572.421550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.33339 -38.29073 -36.04142 -32.54218 -32.31521 -31.11032 -26.99236 -25.55838 -24.06341 -21.93375 -20.69735 -18.14934 -17.81661 -16.89789 -15.62687 -15.41541 -14.96587 -14.88118 -14.48959 -13.55872 -13.37863 -13.09452 -12.86924 -12.19899 -11.96055 -11.59885 -11.41872 -11.28491 -11.12644 -11.10678 -10.74043 -10.09136 -9.88051 -9.19194 -8.96480 -8.72292 -7.96522 -6.75766 -6.31795 -4.06172 0.98529 1.59550 2.72716 3.14440 3.17791 3.19339 3.25334 3.42365 3.97504 4.19435 5.00139 5.05386 5.08350 5.29970 5.43909 5.47599 5.79390 5.81290 5.85933 5.96402 6.16030 6.23638 6.51527 6.59809 6.72463 6.87234 7.13209 7.54247 8.01572 8.29337 9.14056 10.74797 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.006617 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.197986 B = 4230.269885 C = 4443.819026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.021 4.021 3 C -0.149 4.149 4 C -0.038 4.038 5 C -0.121 4.121 6 S -0.033 6.033 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.871 5.871 11 Si 0.921 3.079 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.271 1.271 15 C -0.018 4.018 16 C -0.152 4.152 17 C 0.531 3.469 18 O -0.521 6.521 19 O -0.509 6.509 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.088 0.912 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.270 0.730 26 H 0.141 0.859 27 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -1.987 -2.540 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.022 4.022 3 C -0.168 4.168 4 C -0.059 4.059 5 C -0.232 4.232 6 S 0.201 5.799 7 C -0.669 4.669 8 H 0.094 0.906 9 C -0.135 4.135 10 N -0.506 5.506 11 Si 0.747 3.253 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.196 1.196 15 C -0.039 4.039 16 C -0.155 4.155 17 C 0.378 3.622 18 O -0.412 6.412 19 O -0.320 6.320 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.107 0.893 23 H 0.145 0.855 24 H 0.152 0.848 25 H 0.080 0.920 26 H 0.159 0.841 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.958 -1.661 -3.411 11.596 hybrid contribution -0.928 -0.380 2.181 2.401 sum -11.886 -2.041 -1.229 12.123 Atomic orbital electron populations 1.21071 0.90454 1.02731 1.03249 1.19962 0.96246 0.91459 0.94537 1.21008 0.94358 0.96939 1.04535 1.22069 0.93404 0.98588 0.91825 1.22806 1.03718 0.93804 1.02851 1.83622 0.88425 1.95765 1.12113 1.22850 0.95313 1.58488 0.90278 0.90627 1.24990 0.94971 0.94338 0.99218 1.69988 0.99307 1.46854 1.34437 0.86123 0.77985 0.78453 0.82762 1.20139 1.20670 1.19596 1.22087 0.91702 0.99038 0.91046 1.18904 0.93706 0.89489 1.13387 1.21017 0.85235 0.84310 0.71684 1.90799 1.15384 1.87803 1.47253 1.84640 1.45213 1.16937 1.85234 0.90893 0.92294 0.89323 0.85459 0.84819 0.92042 0.84077 0.73303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.71 36.01 0.31 -1.27 15 2 C -0.02 -0.34 5.92 -104.14 -0.62 -0.95 15 3 C -0.15 -2.30 9.65 -39.68 -0.38 -2.68 15 4 C -0.04 -0.69 9.79 -39.25 -0.38 -1.08 15 5 C -0.12 -2.53 5.45 -39.00 -0.21 -2.74 15 6 S -0.03 -0.84 21.40 -107.50 -2.30 -3.14 15 7 C -0.52 -14.41 9.46 30.91 0.29 -14.12 15 8 H 0.08 2.07 7.79 -52.48 -0.41 1.66 15 9 C 0.07 2.03 5.49 -17.46 -0.10 1.93 15 10 N -0.87 -24.98 13.22 55.49 0.73 -24.25 15 11 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 15 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 15 C -0.02 -0.34 9.36 -38.90 -0.36 -0.70 15 16 C -0.15 -2.59 5.87 -105.01 -0.62 -3.21 15 17 C 0.53 8.21 8.20 34.62 0.28 8.49 15 18 O -0.52 -8.44 14.12 -19.25 -0.27 -8.71 15 19 O -0.51 -6.51 12.70 -40.51 -0.51 -7.02 15 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.06 0.64 8.04 -51.93 -0.42 0.23 15 22 H 0.09 1.25 5.87 -51.93 -0.30 0.94 15 23 H 0.13 1.57 8.05 -52.49 -0.42 1.14 15 24 H 0.13 2.33 8.06 -52.49 -0.42 1.90 15 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 26 H 0.14 2.66 7.62 -52.49 -0.40 2.26 15 27 H 0.41 3.02 9.11 45.56 0.42 3.44 15 LS Contribution 261.22 15.07 3.94 3.94 Total: -1.00 -31.15 261.22 -6.74 -37.90 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -1.52 Total: 1.62 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.78 Total: -16.33 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.73 Total: -24.25 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.79 Total: -15.73 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.30 Total: -3.14 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.15 -6.74 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160431275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.338 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds