Wall clock time and date at job start Mon Mar 30 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38074 * 119.98670 * 2 1 4 4 C 1.38140 * 120.24847 * 180.27436 * 3 2 1 5 5 C 1.39221 * 120.21435 * 359.44301 * 4 3 2 6 6 S 1.76198 * 120.01809 * 180.29699 * 5 4 3 7 7 C 1.76202 * 100.00048 * 86.61867 * 6 5 4 8 8 H 1.08004 * 119.99792 * 3.28094 * 7 6 5 9 9 C 1.38725 * 120.00139 * 183.28082 * 7 6 5 10 10 N 1.31626 * 119.99810 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47223 * 90.00038 * 11 9 7 13 13 H 1.48498 * 109.47240 * 210.00117 * 11 9 7 14 14 H 1.48500 * 109.47098 * 330.00371 * 11 9 7 15 15 C 1.38821 * 119.96638 * 0.27677 * 5 4 3 16 16 C 1.39479 * 119.74999 * 0.02562 * 15 5 4 17 17 C 1.47744 * 120.10430 * 180.02562 * 16 15 5 18 18 O 1.21475 * 120.00160 * 173.81724 * 17 16 15 19 19 O 1.34708 * 120.00233 * 353.81134 * 17 16 15 20 20 H 1.08994 * 109.47390 * 263.34780 * 1 2 3 21 21 H 1.09002 * 109.46869 * 23.34653 * 1 2 3 22 22 H 1.09002 * 109.47330 * 143.34253 * 1 2 3 23 23 H 1.08001 * 119.86900 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.88789 * 179.71897 * 4 3 2 25 25 H 0.97007 * 119.99638 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.12920 * 179.97438 * 15 5 4 27 27 H 0.96704 * 117.00146 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1959 0.0000 4 6 3.5785 1.2022 -0.0057 5 6 4.2846 0.0024 0.0002 6 16 6.0465 0.0165 0.0008 7 6 6.3511 0.1295 1.7326 8 1 5.5251 0.1136 2.4283 9 6 7.6517 0.2388 2.2025 10 7 8.6584 0.2576 1.3546 11 14 7.9745 0.3592 4.0384 12 1 8.1499 -1.0040 4.6007 13 1 9.2068 1.1539 4.2733 14 1 6.8233 1.0235 4.7009 15 6 3.5999 -1.2052 0.0060 16 6 2.2051 -1.2099 0.0054 17 6 1.4684 -2.4905 0.0122 18 8 0.2589 -2.4949 0.1250 19 8 2.1379 -3.6534 -0.1068 20 1 -0.3634 -0.1190 1.0207 21 1 -0.3633 0.9436 -0.4073 22 1 -0.3634 -0.8244 -0.6135 23 1 1.6547 2.1299 -0.0004 24 1 4.1123 2.1410 -0.0103 25 1 9.5679 0.3336 1.6833 26 1 4.1450 -2.1375 0.0102 27 1 1.6126 -4.4653 -0.0975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160431275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:49 Heat of formation + Delta-G solvation = -95.763320 kcal Electronic energy + Delta-G solvation = -13989.263415 eV Core-core repulsion = 11415.994957 eV Total energy + Delta-G solvation = -2573.268458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.55330 -39.58842 -37.18273 -34.63216 -33.61444 -32.45452 -28.29031 -27.61255 -25.34543 -23.21358 -22.04944 -19.90467 -19.13025 -18.34503 -16.91045 -16.88292 -16.72471 -16.30364 -15.97319 -15.08159 -14.56780 -14.47025 -14.25437 -13.54683 -13.29921 -13.13266 -12.96213 -12.90188 -12.71226 -12.51743 -12.40054 -11.70988 -11.25413 -11.19572 -10.68740 -10.08347 -9.56436 -8.79459 -8.37149 -6.17189 -0.35077 0.18352 1.31322 1.39169 1.45387 1.50001 1.67888 2.07942 2.24879 2.64776 2.95879 3.43000 3.76000 3.86415 4.07474 4.22627 4.48961 4.55026 4.73942 4.81732 4.92779 5.02086 5.24498 5.40158 5.41284 5.47986 5.58144 5.81819 6.17937 6.97790 7.03572 8.69476 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.006617 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.197986 B = 4230.269885 C = 4443.819026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 C -0.133 4.133 4 C -0.047 4.047 5 C -0.143 4.143 6 S -0.084 6.084 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.023 3.977 10 N -0.906 5.906 11 Si 0.990 3.010 12 H -0.269 1.269 13 H -0.272 1.272 14 H -0.265 1.265 15 C -0.027 4.027 16 C -0.159 4.159 17 C 0.536 3.464 18 O -0.527 6.527 19 O -0.508 6.508 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.169 0.831 24 H 0.136 0.864 25 H 0.274 0.726 26 H 0.132 0.868 27 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 -1.614 -1.712 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.017 4.017 3 C -0.153 4.153 4 C -0.067 4.067 5 C -0.254 4.254 6 S 0.150 5.850 7 C -0.686 4.686 8 H 0.086 0.914 9 C -0.182 4.182 10 N -0.542 5.542 11 Si 0.812 3.188 12 H -0.194 1.194 13 H -0.197 1.197 14 H -0.190 1.190 15 C -0.048 4.048 16 C -0.162 4.162 17 C 0.383 3.617 18 O -0.420 6.420 19 O -0.322 6.322 20 H 0.096 0.904 21 H 0.108 0.892 22 H 0.100 0.900 23 H 0.186 0.814 24 H 0.154 0.846 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -13.059 -1.316 -2.597 13.380 hybrid contribution -0.424 -0.558 1.849 1.977 sum -13.483 -1.874 -0.748 13.633 Atomic orbital electron populations 1.21098 0.88088 1.04225 1.03602 1.20415 0.97878 0.90952 0.92423 1.21360 0.92993 0.98624 1.02288 1.22119 0.94836 0.97591 0.92173 1.22523 1.00644 0.95765 1.06479 1.83523 0.93744 1.96074 1.11659 1.23088 0.95545 1.58604 0.91320 0.91401 1.25941 0.94567 0.93676 1.04063 1.70102 0.99786 1.47697 1.36623 0.85069 0.78129 0.78760 0.76803 1.19395 1.19671 1.18981 1.21930 0.92798 0.98058 0.91985 1.19124 0.92868 0.91314 1.12913 1.20686 0.84890 0.84523 0.71638 1.90802 1.15426 1.88067 1.47671 1.84593 1.45618 1.17471 1.84563 0.90368 0.89234 0.89963 0.81352 0.84649 0.91706 0.84991 0.70503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.71 71.24 0.62 -1.97 15 2 C -0.02 -0.46 5.92 -19.55 -0.12 -0.58 15 3 C -0.13 -3.73 9.65 22.21 0.21 -3.52 15 4 C -0.05 -1.66 9.79 22.48 0.22 -1.44 15 5 C -0.14 -6.08 5.45 22.65 0.12 -5.95 15 6 S -0.08 -4.43 21.40 -56.49 -1.21 -5.64 15 7 C -0.54 -30.49 9.46 67.94 0.64 -29.85 15 8 H 0.07 3.81 7.79 -2.91 -0.02 3.79 15 9 C 0.02 1.28 5.49 84.84 0.47 1.74 15 10 N -0.91 -53.04 13.22 21.63 0.29 -52.75 15 11 Si 0.99 43.23 29.55 68.60 2.03 45.26 15 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 14 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 15 C -0.03 -1.03 9.36 22.71 0.21 -0.82 15 16 C -0.16 -5.22 5.87 -20.12 -0.12 -5.34 15 17 C 0.54 15.63 8.20 70.34 0.58 16.20 15 18 O -0.53 -15.81 14.12 19.92 0.28 -15.53 15 19 O -0.51 -12.20 12.70 -56.18 -0.71 -12.92 15 20 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.09 1.51 8.04 -2.39 -0.02 1.49 15 22 H 0.08 2.04 5.87 -2.39 -0.01 2.03 15 23 H 0.17 3.32 8.05 -2.91 -0.02 3.30 15 24 H 0.14 4.69 8.06 -2.91 -0.02 4.66 15 25 H 0.27 14.87 8.31 -92.70 -0.77 14.10 15 26 H 0.13 5.16 7.62 -2.91 -0.02 5.14 15 27 H 0.43 5.45 9.11 -74.05 -0.67 4.78 15 Total: -1.00 -67.92 261.22 4.05 -63.88 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.53 Total: 9.21 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 2.84 Total: -31.52 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.29 Total: -52.75 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.43 Total: -28.45 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.21 Total: -5.64 kcal Total: -67.92 4.05 -63.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160431275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.885 kcal (2) G-P(sol) polarization free energy of solvation -67.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds