Wall clock time and date at job start Mon Mar 30 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99844 * 3 2 1 6 6 H 1.48504 * 109.47122 * 59.99886 * 3 2 1 7 7 C 1.37884 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99482 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46819 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.76196 * 102.99988 * 179.97438 * 11 10 9 13 13 C 1.38979 * 120.07969 * 180.02562 * 12 11 10 14 14 C 1.38085 * 119.91784 * 180.02562 * 13 12 11 15 15 C 1.38298 * 120.08130 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.91928 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.46972 * 90.00082 * 16 15 14 18 18 C 1.38306 * 120.16030 * 0.27010 * 15 14 13 19 19 C 1.38080 * 120.07826 * 359.46211 * 18 15 14 20 20 H 0.97001 * 120.00485 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47701 * 59.99548 * 9 7 2 22 22 H 1.09006 * 109.47167 * 299.99404 * 9 7 2 23 23 H 1.08994 * 109.47702 * 59.99691 * 10 9 7 24 24 H 1.09001 * 109.46708 * 299.99049 * 10 9 7 25 25 H 1.08005 * 120.03952 * 359.97438 * 13 12 11 26 26 H 1.08001 * 119.95566 * 179.97438 * 14 13 12 27 27 H 1.09000 * 109.47247 * 330.00017 * 16 15 14 28 28 H 1.09001 * 109.47358 * 209.99444 * 16 15 14 29 29 H 0.96696 * 114.00036 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.95959 * 179.72792 * 18 15 14 31 31 H 1.07998 * 120.03744 * 180.27274 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3384 -5.2330 0.0026 12 6 2.6270 -6.4347 0.0033 13 6 2.3162 -7.7893 0.0034 14 6 3.3288 -8.7282 0.0045 15 6 4.6508 -8.3219 0.0049 16 6 5.7529 -9.3497 0.0055 17 8 6.1018 -9.6748 -1.3417 18 6 4.9638 -6.9748 0.0098 19 6 3.9565 -6.0303 0.0032 20 1 -0.4851 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8714 -3.6040 0.8922 24 1 2.8725 -3.6047 -0.8878 25 1 1.2841 -8.1072 0.0035 26 1 3.0880 -9.7810 0.0050 27 1 5.4115 -10.2483 0.5193 28 1 6.6255 -8.9465 0.5194 29 1 6.8071 -10.3319 -1.4177 30 1 5.9972 -6.6612 0.0146 31 1 4.2017 -4.9785 0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160472500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:07 Heat of formation + Delta-G solvation = -43.238417 kcal Electronic energy + Delta-G solvation = -13632.708914 eV Core-core repulsion = 11197.551201 eV Total energy + Delta-G solvation = -2435.157713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21947 -36.71637 -33.79906 -31.78239 -31.24658 -30.61056 -26.21954 -25.33149 -22.74165 -21.50772 -20.99352 -17.65211 -17.35800 -16.61530 -15.72969 -15.60027 -14.56865 -14.35181 -13.97474 -13.94292 -13.71909 -13.34436 -12.90639 -12.56089 -12.03950 -11.67700 -11.23787 -11.09391 -10.98556 -10.60427 -10.36200 -10.28596 -9.79079 -9.69245 -9.44802 -9.15297 -8.89873 -8.47165 -7.01298 -6.10846 -4.15721 1.21831 1.46467 2.02768 3.02764 3.26091 3.33812 3.37509 3.62701 4.34872 4.38415 4.74840 4.87061 5.04911 5.12945 5.20017 5.25149 5.45208 5.67017 5.82352 5.86254 6.04004 6.07251 6.33410 6.42638 6.56836 6.62882 6.95866 7.38666 7.48122 7.55129 7.84338 8.20910 8.88973 9.48713 11.00054 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045504 B = 0.004335 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.188005 B = 6457.701459 C = 6979.660171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.081 4.081 11 S -0.138 6.138 12 C -0.064 4.064 13 C -0.112 4.112 14 C -0.083 4.083 15 C -0.117 4.117 16 C 0.122 3.878 17 O -0.568 6.568 18 C -0.078 4.078 19 C -0.139 4.139 20 H 0.263 0.737 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.377 0.623 30 H 0.122 0.878 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 -17.463 0.926 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.229 4.229 11 S 0.110 5.890 12 C -0.178 4.178 13 C -0.136 4.136 14 C -0.103 4.103 15 C -0.120 4.120 16 C 0.045 3.955 17 O -0.373 6.373 18 C -0.098 4.098 19 C -0.163 4.163 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.223 0.777 30 H 0.140 0.860 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.913 -16.940 0.806 18.715 hybrid contribution 2.212 0.704 0.151 2.326 sum 10.125 -16.236 0.957 19.158 Atomic orbital electron populations 1.69972 1.06097 1.26887 1.49891 1.25013 0.94909 0.99375 0.94928 0.86446 0.80008 0.83309 0.77721 1.19652 1.20835 1.20848 1.21099 0.93079 0.90071 1.51928 0.92280 1.18936 0.93353 0.89241 0.98702 1.24038 1.02271 0.92645 1.03958 1.85679 1.12519 1.00341 1.90471 1.22101 0.97074 0.97519 1.01099 1.20757 0.99495 0.90840 1.02545 1.20880 0.91835 0.99067 0.98473 1.19500 0.93872 0.93772 1.04863 1.20934 0.95234 0.95815 0.83560 1.86613 1.59499 1.64560 1.26666 1.20901 0.98941 0.92100 0.97901 1.21300 0.91609 1.00293 1.03130 0.92747 0.95351 0.95368 0.90529 0.90515 0.85493 0.85933 0.92960 0.92946 0.77665 0.86003 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.08 -1.69 4.27 37.16 0.16 -1.53 16 11 S -0.14 -2.61 21.92 -107.50 -2.36 -4.97 16 12 C -0.06 -1.07 6.11 -39.04 -0.24 -1.31 16 13 C -0.11 -1.63 9.79 -39.36 -0.39 -2.01 16 14 C -0.08 -1.05 9.69 -39.62 -0.38 -1.44 16 15 C -0.12 -1.48 5.51 -104.58 -0.58 -2.06 16 16 C 0.12 1.15 7.17 36.01 0.26 1.40 16 17 O -0.57 -5.73 13.64 -35.23 -0.48 -6.21 16 18 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 19 C -0.14 -2.18 9.36 -39.37 -0.37 -2.55 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.53 7.75 -51.93 -0.40 1.12 16 24 H 0.08 1.54 7.75 -51.92 -0.40 1.14 16 25 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.38 1.78 9.12 45.56 0.42 2.19 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.13 2.02 5.88 -52.49 -0.31 1.71 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.42 284.04 -8.50 -39.93 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.19 Total: -0.33 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -2.47 Total: -23.29 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.48 Total: -6.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.36 Total: -4.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.42 -8.50 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160472500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds