Wall clock time and date at job start Mon Mar 30 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99844 * 3 2 1 6 6 H 1.48504 * 109.47122 * 59.99886 * 3 2 1 7 7 C 1.37884 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99482 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46819 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.76196 * 102.99988 * 179.97438 * 11 10 9 13 13 C 1.38979 * 120.07969 * 180.02562 * 12 11 10 14 14 C 1.38085 * 119.91784 * 180.02562 * 13 12 11 15 15 C 1.38298 * 120.08130 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.91928 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.46972 * 90.00082 * 16 15 14 18 18 C 1.38306 * 120.16030 * 0.27010 * 15 14 13 19 19 C 1.38080 * 120.07826 * 359.46211 * 18 15 14 20 20 H 0.97001 * 120.00485 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47701 * 59.99548 * 9 7 2 22 22 H 1.09006 * 109.47167 * 299.99404 * 9 7 2 23 23 H 1.08994 * 109.47702 * 59.99691 * 10 9 7 24 24 H 1.09001 * 109.46708 * 299.99049 * 10 9 7 25 25 H 1.08005 * 120.03952 * 359.97438 * 13 12 11 26 26 H 1.08001 * 119.95566 * 179.97438 * 14 13 12 27 27 H 1.09000 * 109.47247 * 330.00017 * 16 15 14 28 28 H 1.09001 * 109.47358 * 209.99444 * 16 15 14 29 29 H 0.96696 * 114.00036 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.95959 * 179.72792 * 18 15 14 31 31 H 1.07998 * 120.03744 * 180.27274 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3384 -5.2330 0.0026 12 6 2.6270 -6.4347 0.0033 13 6 2.3162 -7.7893 0.0034 14 6 3.3288 -8.7282 0.0045 15 6 4.6508 -8.3219 0.0049 16 6 5.7529 -9.3497 0.0055 17 8 6.1018 -9.6748 -1.3417 18 6 4.9638 -6.9748 0.0098 19 6 3.9565 -6.0303 0.0032 20 1 -0.4851 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8714 -3.6040 0.8922 24 1 2.8725 -3.6047 -0.8878 25 1 1.2841 -8.1072 0.0035 26 1 3.0880 -9.7810 0.0050 27 1 5.4115 -10.2483 0.5193 28 1 6.6255 -8.9465 0.5194 29 1 6.8071 -10.3319 -1.4177 30 1 5.9972 -6.6612 0.0146 31 1 4.2017 -4.9785 0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160472500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:07 Heat of formation + Delta-G solvation = -63.324387 kcal Electronic energy + Delta-G solvation = -13633.579907 eV Core-core repulsion = 11197.551201 eV Total energy + Delta-G solvation = -2436.028706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24715 -37.46900 -35.85803 -33.17929 -32.66813 -31.92257 -27.52820 -26.92654 -24.06068 -22.89202 -22.38362 -18.73146 -18.59366 -18.31525 -16.86186 -16.63034 -16.46799 -15.73728 -15.68236 -15.00182 -14.72293 -14.41074 -14.26717 -13.97292 -13.68258 -13.26630 -12.98409 -12.47411 -12.31311 -12.25404 -12.04054 -11.76327 -11.34348 -11.04502 -10.92697 -10.67641 -10.60407 -9.98187 -8.43271 -8.25879 -6.39455 0.12031 0.37884 0.58132 1.40672 1.40936 1.52856 1.54892 2.39008 2.59267 3.07934 3.61506 3.80241 3.97342 4.13345 4.16522 4.24729 4.30993 4.41671 4.54998 4.64742 4.77000 4.79922 5.03818 5.26887 5.31130 5.32654 5.42120 5.55968 5.69744 5.91368 6.06913 6.74142 6.96919 7.30299 8.86273 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045504 B = 0.004335 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.188005 B = 6457.701459 C = 6979.660171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.067 4.067 11 S -0.163 6.163 12 C -0.086 4.086 13 C -0.117 4.117 14 C -0.081 4.081 15 C -0.114 4.114 16 C 0.122 3.878 17 O -0.591 6.591 18 C -0.084 4.084 19 C -0.153 4.153 20 H 0.266 0.734 21 H 0.000 1.000 22 H 0.001 0.999 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.400 0.600 30 H 0.144 0.856 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.170 -18.939 1.045 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.214 4.214 11 S 0.084 5.916 12 C -0.199 4.199 13 C -0.141 4.141 14 C -0.101 4.101 15 C -0.117 4.117 16 C 0.045 3.955 17 O -0.401 6.401 18 C -0.104 4.104 19 C -0.177 4.177 20 H 0.075 0.925 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.161 0.839 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.297 -18.451 0.924 21.150 hybrid contribution 1.540 0.969 0.103 1.823 sum 11.837 -17.482 1.027 21.137 Atomic orbital electron populations 1.70106 1.07946 1.28109 1.50841 1.26012 0.95796 1.03520 0.94253 0.85286 0.79043 0.78168 0.77865 1.18312 1.20286 1.20236 1.21536 0.93730 0.91178 1.51755 0.91410 1.18706 0.93624 0.91202 0.96006 1.23630 1.00979 0.92420 1.04421 1.85583 1.14019 1.00261 1.91778 1.22038 0.96352 0.97399 1.04089 1.20985 1.00752 0.90223 1.02128 1.21263 0.91451 1.00238 0.97158 1.20033 0.95101 0.94295 1.02290 1.21000 0.94820 0.95898 0.83777 1.86533 1.60856 1.65770 1.26930 1.21197 0.99461 0.92370 0.97391 1.21377 0.91853 1.00607 1.03865 0.92470 0.98125 0.98035 0.89897 0.90100 0.84606 0.82795 0.90522 0.91122 0.74955 0.83859 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.04 2.32 4.98 29.85 0.15 2.47 16 10 C -0.07 -2.86 4.27 71.98 0.31 -2.55 16 11 S -0.16 -6.34 21.92 -56.49 -1.24 -7.58 16 12 C -0.09 -2.83 6.11 22.62 0.14 -2.69 16 13 C -0.12 -3.24 9.79 22.41 0.22 -3.02 16 14 C -0.08 -1.84 9.69 22.25 0.22 -1.62 16 15 C -0.11 -2.54 5.51 -19.83 -0.11 -2.65 16 16 C 0.12 1.79 7.17 71.24 0.51 2.30 16 17 O -0.59 -9.73 13.64 -148.98 -2.03 -11.76 16 18 C -0.08 -2.12 9.69 22.25 0.22 -1.90 16 19 C -0.15 -4.71 9.36 22.41 0.21 -4.50 16 20 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 21 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 22 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 23 H 0.08 3.39 7.75 -2.39 -0.02 3.37 16 24 H 0.08 3.35 7.75 -2.39 -0.02 3.33 16 25 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 27 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.40 2.27 9.12 -74.06 -0.68 1.60 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.12 3.83 5.88 -2.91 -0.02 3.81 16 Total: -1.00 -68.72 284.04 2.04 -66.68 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.45 Total: 7.13 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 2.55 Total: -43.94 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -2.03 Total: -11.76 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -1.24 Total: -7.58 kcal Total: -68.72 2.04 -66.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160472500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.356 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds