Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47427 * 269.99703 * 3 2 1 5 5 H 1.48497 * 109.47277 * 30.00352 * 3 2 1 6 6 H 1.48501 * 109.46952 * 149.99922 * 3 2 1 7 7 C 1.37877 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99682 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46958 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.35656 * 116.99928 * 179.97438 * 11 10 9 13 13 C 1.38910 * 120.17562 * 90.00952 * 12 11 10 14 14 F 1.35104 * 119.96453 * 0.02562 * 13 12 11 15 15 C 1.38197 * 120.06780 * 179.74720 * 13 12 11 16 16 C 1.38634 * 120.43327 * 0.26943 * 15 13 12 17 17 C 1.37655 * 120.35780 * 359.97438 * 16 15 13 18 18 C 1.40058 * 119.92088 * 0.02562 * 17 16 15 19 19 C 1.46787 * 120.21463 * 180.02562 * 18 17 16 20 20 O 1.21303 * 119.99478 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99695 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47551 * 59.99643 * 9 7 2 23 23 H 1.09007 * 109.47151 * 299.99179 * 9 7 2 24 24 H 1.09004 * 109.47245 * 60.00404 * 10 9 7 25 25 H 1.08992 * 109.47339 * 299.99706 * 10 9 7 26 26 H 1.07999 * 119.78483 * 180.25224 * 15 13 12 27 27 H 1.07999 * 119.82282 * 180.02562 * 16 15 13 28 28 H 1.08002 * 120.03741 * 179.97438 * 17 16 15 29 29 H 1.08003 * 120.00372 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6366 -0.0001 12 6 6.0664 -3.8453 0.0003 13 6 6.3835 -4.4678 -1.2003 14 9 6.0787 -3.8685 -2.3722 15 6 7.0156 -5.6967 -1.1973 16 6 7.3329 -6.3202 -0.0004 17 6 7.0224 -5.7216 1.1996 18 6 6.3818 -4.4762 1.2139 19 6 6.0481 -3.8318 2.4899 20 8 6.3276 -4.3778 3.5364 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6807 0.8905 23 1 3.8752 -0.6797 -0.8896 24 1 3.6586 -3.1502 -0.8904 25 1 3.6579 -3.1506 0.8896 26 1 7.2637 -6.1747 -2.1334 27 1 7.8273 -7.2804 -0.0096 28 1 7.2716 -6.2121 2.1289 29 1 5.5545 -2.8712 2.4969 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165285867.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -96.437083 kcal Electronic energy + Delta-G solvation = -16165.060923 eV Core-core repulsion = 13161.383167 eV Total energy + Delta-G solvation = -3003.677756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.86518 -40.17804 -38.44014 -37.31451 -33.41735 -31.41571 -30.93065 -29.60707 -25.49551 -24.84614 -22.52364 -21.21590 -20.86394 -18.20455 -17.48053 -17.25468 -16.56950 -15.80173 -15.46415 -15.17217 -14.76449 -14.60341 -14.49490 -14.18273 -13.93207 -13.31605 -12.64942 -12.41142 -12.23298 -12.07526 -11.47450 -11.35523 -10.65386 -10.28845 -9.96660 -9.88876 -9.48670 -9.41019 -9.16674 -8.73084 -8.64969 -6.16142 -4.17695 0.31201 0.89635 2.27046 3.27025 3.28052 3.34722 3.38880 3.75583 4.00566 4.28376 4.36537 4.52923 4.80707 4.92581 5.17826 5.24139 5.39535 5.65103 5.74336 5.83610 5.85028 5.91810 6.07587 6.33421 6.43789 6.98169 7.17528 7.32215 7.55148 7.69226 8.35244 8.84370 9.43650 10.96297 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.006297 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.891516 B = 4445.155546 C = 5001.504736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.080 3.920 11 O -0.336 6.336 12 C 0.134 3.866 13 C 0.063 3.937 14 F -0.126 7.126 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.059 4.059 18 C -0.192 4.192 19 C 0.390 3.610 20 O -0.462 6.462 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.675 -10.804 -0.621 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.046 4.046 10 C 0.008 3.992 11 O -0.254 6.254 12 C 0.088 3.912 13 C 0.043 3.957 14 F -0.105 7.105 15 C -0.129 4.129 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.194 4.194 19 C 0.249 3.751 20 O -0.335 6.335 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.700 -10.758 -0.099 18.216 hybrid contribution 0.123 0.842 -0.545 1.011 sum 14.823 -9.915 -0.644 17.845 Atomic orbital electron populations 1.69893 1.06297 1.27270 1.49997 1.24930 0.94755 0.99207 0.94047 0.86759 0.80441 0.83268 0.78806 1.20046 1.21170 1.18687 1.20818 0.88238 0.94964 1.52601 0.90751 1.19601 0.96898 0.89995 0.98078 1.23210 0.73416 1.02186 1.00434 1.86016 1.23156 1.22245 1.93964 1.19065 0.95185 0.86605 0.90394 1.18080 1.03084 0.93120 0.81373 1.91547 1.91148 1.83103 1.44676 1.21337 0.97858 0.93415 1.00330 1.20952 1.01159 1.00695 0.91094 1.21399 0.94310 0.92876 0.99110 1.21184 1.05666 0.97062 0.95492 1.23978 0.74929 0.90345 0.85844 1.90500 1.43056 1.65281 1.34678 0.92397 0.95281 0.95631 0.92803 0.92860 0.83997 0.84310 0.84049 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.19 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 15 7 C -0.53 -14.59 9.66 -34.44 -0.33 -14.92 15 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 15 9 C -0.01 -0.19 4.41 -27.88 -0.12 -0.32 15 10 C 0.08 1.57 6.00 37.16 0.22 1.79 15 11 O -0.34 -6.05 9.10 -18.67 -0.17 -6.22 15 12 C 0.13 2.04 5.75 -38.53 -0.22 1.82 15 13 C 0.06 0.89 7.30 -39.35 -0.29 0.60 15 14 F -0.13 -1.99 17.11 2.25 0.04 -1.96 15 15 C -0.11 -1.15 10.01 -39.45 -0.39 -1.54 15 16 C -0.12 -1.10 10.02 -39.65 -0.40 -1.50 15 17 C -0.06 -0.64 9.59 -39.11 -0.38 -1.02 15 18 C -0.19 -2.61 5.88 -104.96 -0.62 -3.23 15 19 C 0.39 5.51 11.19 34.19 0.38 5.89 15 20 O -0.46 -7.34 17.16 5.54 0.10 -7.25 15 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.03 0.67 7.20 -51.93 -0.37 0.29 15 23 H 0.03 0.60 7.57 -51.92 -0.39 0.21 15 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.14 1.10 8.06 -52.49 -0.42 0.67 15 27 H 0.14 0.81 8.06 -52.49 -0.42 0.39 15 28 H 0.14 1.38 7.65 -52.49 -0.40 0.98 15 29 H 0.12 1.57 7.63 -52.48 -0.40 1.17 15 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -30.93 269.58 -4.96 -35.88 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.85 Total: -4.44 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.24 Total: -10.44 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.07 Total: -13.47 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.93 -4.96 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165285867.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.555 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds