Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47427 * 269.99703 * 3 2 1 5 5 H 1.48497 * 109.47277 * 30.00352 * 3 2 1 6 6 H 1.48501 * 109.46952 * 149.99922 * 3 2 1 7 7 C 1.37877 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99682 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46958 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.35656 * 116.99928 * 179.97438 * 11 10 9 13 13 C 1.38910 * 120.17562 * 90.00952 * 12 11 10 14 14 F 1.35104 * 119.96453 * 0.02562 * 13 12 11 15 15 C 1.38197 * 120.06780 * 179.74720 * 13 12 11 16 16 C 1.38634 * 120.43327 * 0.26943 * 15 13 12 17 17 C 1.37655 * 120.35780 * 359.97438 * 16 15 13 18 18 C 1.40058 * 119.92088 * 0.02562 * 17 16 15 19 19 C 1.46787 * 120.21463 * 180.02562 * 18 17 16 20 20 O 1.21303 * 119.99478 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99695 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47551 * 59.99643 * 9 7 2 23 23 H 1.09007 * 109.47151 * 299.99179 * 9 7 2 24 24 H 1.09004 * 109.47245 * 60.00404 * 10 9 7 25 25 H 1.08992 * 109.47339 * 299.99706 * 10 9 7 26 26 H 1.07999 * 119.78483 * 180.25224 * 15 13 12 27 27 H 1.07999 * 119.82282 * 180.02562 * 16 15 13 28 28 H 1.08002 * 120.03741 * 179.97438 * 17 16 15 29 29 H 1.08003 * 120.00372 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6366 -0.0001 12 6 6.0664 -3.8453 0.0003 13 6 6.3835 -4.4678 -1.2003 14 9 6.0787 -3.8685 -2.3722 15 6 7.0156 -5.6967 -1.1973 16 6 7.3329 -6.3202 -0.0004 17 6 7.0224 -5.7216 1.1996 18 6 6.3818 -4.4762 1.2139 19 6 6.0481 -3.8318 2.4899 20 8 6.3276 -4.3778 3.5364 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6807 0.8905 23 1 3.8752 -0.6797 -0.8896 24 1 3.6586 -3.1502 -0.8904 25 1 3.6579 -3.1506 0.8896 26 1 7.2637 -6.1747 -2.1334 27 1 7.8273 -7.2804 -0.0096 28 1 7.2716 -6.2121 2.1289 29 1 5.5545 -2.8712 2.4969 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165285867.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -115.727500 kcal Electronic energy + Delta-G solvation = -16165.897418 eV Core-core repulsion = 13161.383167 eV Total energy + Delta-G solvation = -3004.514251 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.97877 -41.28147 -39.66332 -38.42194 -35.42459 -32.98514 -32.13104 -30.79727 -27.12683 -26.07428 -23.59845 -22.70858 -22.25181 -19.59272 -18.75312 -18.52083 -18.07247 -17.00572 -16.49408 -16.35822 -16.19131 -16.11065 -15.87457 -15.51945 -15.23660 -14.60073 -14.44990 -13.60309 -13.44457 -13.18895 -12.96630 -12.88023 -12.35452 -12.16030 -11.79809 -11.51781 -11.20132 -10.84335 -10.75975 -10.12814 -9.75979 -8.34457 -6.41392 -0.68647 -0.08340 1.24821 1.37550 1.38675 1.51071 2.20678 2.33737 2.68427 2.92799 3.01007 3.27953 3.70508 3.86915 4.11035 4.19559 4.22386 4.27523 4.40919 4.64426 4.69545 4.90193 5.04226 5.09936 5.20125 5.31592 5.49873 5.59334 6.15897 6.21414 6.31909 6.64718 7.23874 8.81333 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.006297 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.891516 B = 4445.155546 C = 5001.504736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.537 4.537 8 H 0.040 0.960 9 C -0.006 4.006 10 C 0.093 3.907 11 O -0.345 6.345 12 C 0.101 3.899 13 C 0.041 3.959 14 F -0.143 7.143 15 C -0.095 4.095 16 C -0.097 4.097 17 C -0.056 4.056 18 C -0.202 4.202 19 C 0.394 3.606 20 O -0.483 6.483 21 H 0.270 0.730 22 H 0.036 0.964 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.175 0.825 27 H 0.186 0.814 28 H 0.157 0.843 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.178 -11.965 -0.815 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.169 1.169 7 C -0.575 4.575 8 H 0.058 0.942 9 C -0.044 4.044 10 C 0.020 3.980 11 O -0.263 6.263 12 C 0.055 3.945 13 C 0.021 3.979 14 F -0.122 7.122 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.074 4.074 18 C -0.203 4.203 19 C 0.255 3.745 20 O -0.358 6.358 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.193 0.807 27 H 0.203 0.797 28 H 0.175 0.825 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.224 -11.935 -0.298 20.957 hybrid contribution -0.608 1.006 -0.502 1.278 sum 16.616 -10.929 -0.800 19.904 Atomic orbital electron populations 1.70032 1.08178 1.28498 1.51605 1.25881 0.95592 1.03324 0.93643 0.85688 0.79623 0.78258 0.79331 1.19231 1.20609 1.16880 1.21111 0.90634 0.93781 1.51941 0.94180 1.19454 0.94147 0.92612 0.98157 1.22769 0.75248 0.99653 1.00349 1.85955 1.21671 1.24446 1.94230 1.19268 0.96894 0.86615 0.91707 1.18440 1.04547 0.94554 0.80366 1.91502 1.91550 1.83680 1.45445 1.21762 0.95635 0.91539 1.02440 1.21479 0.98860 1.01637 0.89476 1.21726 0.93168 0.91668 1.00833 1.21154 1.06700 0.98196 0.94275 1.24047 0.74222 0.90300 0.85977 1.90488 1.44181 1.65804 1.35330 0.92126 0.94609 0.95630 0.93621 0.92310 0.80713 0.79679 0.82506 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.96 21.45 0.30 -57.87 15 2 C 0.01 0.79 5.47 84.65 0.46 1.25 15 3 Si 0.95 43.70 27.47 68.60 1.88 45.58 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 15 7 C -0.54 -30.44 9.66 25.60 0.25 -30.19 15 8 H 0.04 2.47 7.99 -2.91 -0.02 2.44 15 9 C -0.01 -0.29 4.41 29.85 0.13 -0.16 15 10 C 0.09 3.71 6.00 71.98 0.43 4.14 15 11 O -0.35 -12.45 9.10 -89.72 -0.82 -13.27 15 12 C 0.10 3.01 5.75 22.95 0.13 3.14 15 13 C 0.04 1.08 7.30 22.42 0.16 1.24 15 14 F -0.14 -4.44 17.11 44.97 0.77 -3.67 15 15 C -0.10 -1.61 10.01 22.35 0.22 -1.39 15 16 C -0.10 -1.30 10.02 22.23 0.22 -1.07 15 17 C -0.06 -1.05 9.59 22.57 0.22 -0.83 15 18 C -0.20 -5.20 5.88 -20.08 -0.12 -5.32 15 19 C 0.39 10.95 11.19 70.06 0.78 11.73 15 20 O -0.48 -15.02 17.16 -3.10 -0.05 -15.07 15 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 22 H 0.04 1.62 7.20 -2.39 -0.02 1.61 15 23 H 0.03 1.19 7.57 -2.38 -0.02 1.17 15 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.18 1.82 8.06 -2.91 -0.02 1.80 15 27 H 0.19 0.87 8.06 -2.91 -0.02 0.85 15 28 H 0.16 2.50 7.65 -2.91 -0.02 2.48 15 29 H 0.12 3.16 7.63 -2.91 -0.02 3.14 15 Total: -1.00 -68.63 269.58 6.09 -62.54 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 1.11 Total: -0.79 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 2.90 Total: -17.45 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.87 Total: -28.34 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.77 Total: -3.67 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -68.63 6.09 -62.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165285867.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.186 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds