Wall clock time and date at job start Mon Mar 30 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47385 * 240.00275 * 3 2 1 5 5 H 1.48503 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00175 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36433 * 119.81257 * 180.23043 * 10 9 7 12 12 C 1.39311 * 120.18745 * 359.49339 * 11 10 9 13 13 O 1.35676 * 119.82105 * 180.27884 * 12 11 10 14 14 C 1.42900 * 116.99767 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.31162 * 119.99932 * 135.00133 * 15 14 13 17 17 Cl 1.73600 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.39318 * 120.36095 * 0.26208 * 12 11 10 19 19 C 1.36432 * 120.18845 * 359.97438 * 18 12 11 20 20 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.09414 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.90986 * 179.77322 * 11 10 9 23 23 H 1.08997 * 109.47498 * 299.99543 * 14 13 12 24 24 H 1.08994 * 109.47350 * 59.99907 * 14 13 12 25 25 H 1.08000 * 120.00303 * 314.99826 * 15 14 13 26 26 H 1.07998 * 119.99986 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.90384 * 180.02562 * 18 12 11 28 28 H 1.07996 * 120.09717 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5679 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4674 14 6 -0.0201 -7.1115 -0.9603 15 6 -0.8436 -8.2699 -1.4616 16 6 -0.2507 -9.3427 -1.9282 17 17 1.4828 -9.4281 -1.9690 18 6 1.1892 -4.7966 -0.2796 19 6 1.8282 -3.6481 0.0864 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1443 -1.4105 -1.5764 22 1 -1.2745 -3.4833 -2.2097 23 1 1.0095 -7.2233 -1.3003 24 1 -0.0431 -7.0945 0.1292 25 1 -1.9220 -8.2166 -1.4366 26 1 -0.8408 -10.1726 -2.2878 27 1 1.5524 -5.7507 0.0728 28 1 2.6959 -3.6920 0.7279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000210695155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:39 Heat of formation + Delta-G solvation = -12.286755 kcal Electronic energy + Delta-G solvation = -13814.368746 eV Core-core repulsion = 11242.676397 eV Total energy + Delta-G solvation = -2571.692349 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.86125 -36.99807 -36.31852 -33.71477 -33.01682 -29.77817 -29.00912 -26.43823 -24.58921 -21.29659 -20.62661 -19.81499 -17.32342 -17.17273 -16.14322 -15.31308 -15.06750 -14.09729 -13.90253 -13.78915 -12.92459 -12.57627 -12.27850 -12.14881 -11.92900 -11.56571 -11.42320 -11.08897 -10.89850 -10.69009 -10.53552 -9.92424 -9.86263 -9.36744 -9.18996 -8.97788 -7.63255 -7.02444 -6.71705 -4.24897 1.72639 2.24414 2.79687 2.96598 3.08444 3.11060 3.23142 3.95691 4.12574 4.62648 4.89699 5.22025 5.53110 5.68107 5.70470 5.99947 6.10980 6.18165 6.23902 6.72906 6.99041 7.12220 7.19409 7.47032 7.56497 7.80662 8.01144 8.21192 8.44849 8.65464 8.90665 8.99395 10.22831 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.062116 B = 0.004603 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.661209 B = 6081.471025 C = 6392.767260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.010 4.010 13 O -0.325 6.325 14 C 0.082 3.918 15 C -0.126 4.126 16 C -0.109 4.109 17 Cl -0.093 7.093 18 C -0.166 4.166 19 C -0.198 4.198 20 H 0.280 0.720 21 H 0.126 0.874 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.094 0.906 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -11.463 -2.322 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.087 3.913 10 C -0.154 4.154 11 C -0.138 4.138 12 C -0.053 4.053 13 O -0.241 6.241 14 C 0.006 3.994 15 C -0.145 4.145 16 C -0.154 4.154 17 Cl -0.066 7.066 18 C -0.185 4.185 19 C -0.218 4.218 20 H 0.091 0.909 21 H 0.143 0.857 22 H 0.115 0.885 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.159 0.841 26 H 0.170 0.830 27 H 0.112 0.888 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.192 -11.319 -2.426 11.638 hybrid contribution 0.530 0.638 0.279 0.875 sum -0.662 -10.681 -2.147 10.915 Atomic orbital electron populations 1.69824 1.07500 1.29235 1.35960 1.25879 0.94724 1.01215 0.92364 0.86378 0.80123 0.80345 0.79910 1.18878 1.20394 1.19106 1.19435 0.98028 0.91243 1.40679 0.90574 1.17593 0.91855 0.92089 0.89796 1.20972 0.98519 0.96280 0.99595 1.19826 1.00783 0.90206 1.02959 1.18574 0.97005 0.84554 1.05143 1.85815 1.54934 1.12215 1.71117 1.21605 0.96805 0.82648 0.98334 1.23060 1.01154 0.93502 0.96815 1.24443 0.84551 1.01472 1.04884 1.98363 1.12988 1.98047 1.97154 1.20420 0.97748 0.97842 1.02447 1.20571 1.03109 0.92487 1.05613 0.90868 0.85658 0.88475 0.91152 0.91596 0.84057 0.83033 0.88773 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.96 55.55 0.61 -20.16 15 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 15 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 15 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.46 -12.39 9.04 -37.83 -0.34 -12.74 15 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 15 9 C 0.09 2.40 5.57 -106.80 -0.60 1.80 15 10 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 15 11 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 15 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 15 13 O -0.32 -6.70 10.11 -18.73 -0.19 -6.89 15 14 C 0.08 1.33 4.92 36.01 0.18 1.51 15 15 C -0.13 -1.57 9.90 -36.07 -0.36 -1.93 15 16 C -0.11 -1.17 10.82 28.97 0.31 -0.85 15 17 Cl -0.09 -1.14 27.03 -51.86 -1.40 -2.54 15 18 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 15 19 C -0.20 -4.93 9.74 -39.25 -0.38 -5.32 15 20 H 0.28 6.64 8.30 -40.82 -0.34 6.31 15 21 H 0.13 3.36 6.17 -52.49 -0.32 3.03 15 22 H 0.10 2.18 8.06 -52.48 -0.42 1.75 15 23 H 0.07 1.16 5.69 -51.93 -0.30 0.87 15 24 H 0.07 1.05 7.65 -51.93 -0.40 0.65 15 25 H 0.14 1.51 8.06 -52.49 -0.42 1.08 15 26 H 0.15 1.13 8.06 -52.49 -0.42 0.71 15 27 H 0.09 1.90 6.27 -52.49 -0.33 1.57 15 28 H 0.09 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 262.59 15.07 3.96 3.96 Total: -1.00 -28.15 262.59 -7.27 -35.42 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -2.59 Total: 4.04 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -2.63 Total: -27.56 kcal Atomic # 7 Polarization: -20.77 SS G_CDS: 0.61 Total: -20.16 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.19 Total: -6.89 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.40 Total: -2.54 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.15 -7.27 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210695155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.128 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds