Wall clock time and date at job start Mon Mar 30 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47385 * 240.00275 * 3 2 1 5 5 H 1.48503 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00175 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36433 * 119.81257 * 180.23043 * 10 9 7 12 12 C 1.39311 * 120.18745 * 359.49339 * 11 10 9 13 13 O 1.35676 * 119.82105 * 180.27884 * 12 11 10 14 14 C 1.42900 * 116.99767 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.31162 * 119.99932 * 135.00133 * 15 14 13 17 17 Cl 1.73600 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.39318 * 120.36095 * 0.26208 * 12 11 10 19 19 C 1.36432 * 120.18845 * 359.97438 * 18 12 11 20 20 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.09414 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.90986 * 179.77322 * 11 10 9 23 23 H 1.08997 * 109.47498 * 299.99543 * 14 13 12 24 24 H 1.08994 * 109.47350 * 59.99907 * 14 13 12 25 25 H 1.08000 * 120.00303 * 314.99826 * 15 14 13 26 26 H 1.07998 * 119.99986 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.90384 * 180.02562 * 18 12 11 28 28 H 1.07996 * 120.09717 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5679 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4674 14 6 -0.0201 -7.1115 -0.9603 15 6 -0.8436 -8.2699 -1.4616 16 6 -0.2507 -9.3427 -1.9282 17 17 1.4828 -9.4281 -1.9690 18 6 1.1892 -4.7966 -0.2796 19 6 1.8282 -3.6481 0.0864 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1443 -1.4105 -1.5764 22 1 -1.2745 -3.4833 -2.2097 23 1 1.0095 -7.2233 -1.3003 24 1 -0.0431 -7.0945 0.1292 25 1 -1.9220 -8.2166 -1.4366 26 1 -0.8408 -10.1726 -2.2878 27 1 1.5524 -5.7507 0.0728 28 1 2.6959 -3.6920 0.7279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210695155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:39 Heat of formation + Delta-G solvation = -27.061861 kcal Electronic energy + Delta-G solvation = -13815.009443 eV Core-core repulsion = 11242.676397 eV Total energy + Delta-G solvation = -2572.333045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56454 -38.41416 -37.63390 -35.33923 -34.36011 -31.66459 -30.90849 -27.82410 -26.39719 -23.04728 -22.49093 -20.93282 -19.23372 -18.80011 -17.36554 -17.06005 -16.57784 -15.77204 -15.50480 -15.13398 -14.61034 -14.09404 -13.96417 -13.65537 -13.50409 -13.12593 -12.79392 -12.72537 -12.50806 -12.38557 -11.88601 -11.69051 -11.44386 -11.17299 -10.89578 -10.14499 -9.56933 -8.93554 -8.60014 -6.23507 0.79014 0.94906 1.01933 1.35531 1.40093 1.50876 1.55107 2.23072 2.69030 2.74183 3.69529 3.84530 4.15450 4.25822 4.32715 4.36770 4.64598 4.87022 5.05045 5.06097 5.17772 5.24931 5.28267 5.57488 5.64392 5.88146 6.04878 6.25778 6.55301 6.78139 6.94451 7.07935 8.36641 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.062116 B = 0.004603 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.661209 B = 6081.471025 C = 6392.767260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.057 3.943 10 C -0.153 4.153 11 C -0.131 4.131 12 C -0.002 4.002 13 O -0.331 6.331 14 C 0.073 3.927 15 C -0.146 4.146 16 C -0.085 4.085 17 Cl -0.109 7.109 18 C -0.165 4.165 19 C -0.210 4.210 20 H 0.288 0.712 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.162 0.838 26 H 0.192 0.808 27 H 0.124 0.876 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -12.549 -2.504 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.055 3.945 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.046 4.046 13 O -0.247 6.247 14 C -0.002 4.002 15 C -0.165 4.165 16 C -0.129 4.129 17 Cl -0.081 7.081 18 C -0.184 4.184 19 C -0.230 4.230 20 H 0.099 0.901 21 H 0.130 0.870 22 H 0.130 0.870 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.179 0.821 26 H 0.209 0.791 27 H 0.141 0.859 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.253 -12.437 -2.607 12.769 hybrid contribution 0.501 0.768 0.315 0.969 sum -0.753 -11.669 -2.292 11.916 Atomic orbital electron populations 1.69877 1.08946 1.30600 1.36258 1.26744 0.95508 1.04479 0.91299 0.85245 0.78744 0.75668 0.79991 1.18567 1.19221 1.18424 1.19698 0.98327 0.92422 1.42541 0.90592 1.17948 0.92685 0.93217 0.90693 1.20915 0.99262 0.96481 1.00566 1.20017 1.01236 0.90402 1.03284 1.18662 0.96592 0.85416 1.03944 1.85809 1.54985 1.12691 1.71264 1.21882 0.97546 0.81946 0.98779 1.23010 1.01846 0.92601 0.99035 1.24978 0.83722 1.01840 1.02363 1.98375 1.14638 1.98023 1.97051 1.20690 0.97316 0.98539 1.01839 1.20801 1.03679 0.92596 1.05885 0.90125 0.87030 0.87010 0.91485 0.91371 0.82091 0.79099 0.85868 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.97 10.96 21.82 0.24 -43.73 15 2 C 0.03 1.73 5.14 85.24 0.44 2.16 15 3 Si 0.98 38.57 29.60 68.60 2.03 40.60 15 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 15 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 7 C -0.50 -27.38 9.04 23.40 0.21 -27.16 15 8 H 0.08 3.99 7.91 -2.91 -0.02 3.96 15 9 C 0.06 3.13 5.57 -21.28 -0.12 3.02 15 10 C -0.15 -8.27 8.64 22.48 0.19 -8.08 15 11 C -0.13 -6.45 9.92 22.11 0.22 -6.23 15 12 C 0.00 -0.11 6.71 22.79 0.15 0.04 15 13 O -0.33 -13.22 10.11 -89.94 -0.91 -14.13 15 14 C 0.07 2.25 4.92 71.24 0.35 2.60 15 15 C -0.15 -3.21 9.90 25.49 0.25 -2.96 15 16 C -0.09 -1.53 10.82 67.62 0.73 -0.80 15 17 Cl -0.11 -2.41 27.03 -2.72 -0.07 -2.48 15 18 C -0.17 -7.51 8.96 22.11 0.20 -7.31 15 19 C -0.21 -10.55 9.74 22.48 0.22 -10.33 15 20 H 0.29 13.80 8.30 -92.71 -0.77 13.03 15 21 H 0.11 6.23 6.17 -2.91 -0.02 6.21 15 22 H 0.11 5.03 8.06 -2.91 -0.02 5.01 15 23 H 0.07 2.10 5.69 -2.39 -0.01 2.08 15 24 H 0.07 2.04 7.65 -2.39 -0.02 2.02 15 25 H 0.16 2.91 8.06 -2.91 -0.02 2.89 15 26 H 0.19 1.94 8.06 -2.91 -0.02 1.92 15 27 H 0.12 4.77 6.27 -2.91 -0.02 4.75 15 28 H 0.10 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -61.04 262.59 5.30 -55.74 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.17 Total: 19.05 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 2.85 Total: -55.04 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.24 Total: -43.73 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.91 Total: -14.13 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.07 Total: -2.48 kcal Total: -61.04 5.30 -55.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210695155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.677 kcal (2) G-P(sol) polarization free energy of solvation -61.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds