Wall clock time and date at job start Mon Mar 30 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48504 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47204 * 299.99829 * 3 2 1 6 6 H 1.48498 * 109.47493 * 59.99869 * 3 2 1 7 7 C 1.38648 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99655 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.35683 * 116.99717 * 185.09861 * 9 7 2 11 11 C 1.39024 * 119.92884 * 354.30077 * 10 9 7 12 12 C 1.37783 * 120.07454 * 179.97438 * 11 10 9 13 13 C 1.39645 * 119.92399 * 359.97438 * 12 11 10 14 14 C 1.47720 * 120.07344 * 179.97438 * 13 12 11 15 15 C 1.32647 * 119.99904 * 39.74862 * 14 13 12 16 16 C 1.50700 * 119.99788 * 7.15432 * 15 14 13 17 17 Cl 1.80306 * 109.46978 * 127.14692 * 16 15 14 18 18 C 1.39640 * 119.85547 * 0.24841 * 13 12 11 19 19 C 1.37786 * 119.92540 * 359.51560 * 18 13 12 20 20 H 0.97001 * 119.99506 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.96553 * 359.97438 * 11 10 9 22 22 H 1.08000 * 120.03964 * 179.97438 * 12 11 10 23 23 H 1.07999 * 120.00660 * 219.74890 * 14 13 12 24 24 H 1.08001 * 120.00027 * 186.88016 * 15 14 13 25 25 H 1.08997 * 109.46914 * 247.14072 * 16 15 14 26 26 H 1.08997 * 109.47559 * 7.14344 * 16 15 14 27 27 H 1.08001 * 120.03904 * 179.74607 * 18 13 12 28 28 H 1.07998 * 119.96249 * 180.21266 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3682 0.0005 10 6 2.0696 -3.5037 0.1085 11 6 3.4581 -3.4354 0.0932 12 6 4.2073 -4.5865 0.2031 13 6 3.5704 -5.8227 0.3307 14 6 4.3703 -7.0590 0.4482 15 6 5.4770 -7.0658 1.1794 16 6 5.8332 -5.8656 2.0184 17 17 6.1328 -6.3879 3.7179 18 6 2.1755 -5.8882 0.3411 19 6 1.4323 -4.7328 0.2356 20 1 -0.4849 0.8401 0.0004 21 1 3.9501 -2.4790 -0.0051 22 1 5.2859 -4.5329 0.1907 23 1 4.0542 -7.9573 -0.0611 24 1 6.1206 -7.9331 1.1769 25 1 6.7323 -5.3968 1.6186 26 1 5.0107 -5.1507 1.9976 27 1 1.6798 -6.8431 0.4354 28 1 0.3535 -4.7825 0.2470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211897971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:17 Heat of formation + Delta-G solvation = -1.141550 kcal Electronic energy + Delta-G solvation = -13912.534691 eV Core-core repulsion = 11341.325634 eV Total energy + Delta-G solvation = -2571.209056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25539 -37.27628 -35.80836 -34.01290 -32.30989 -30.39900 -28.79686 -26.44293 -25.38933 -21.97874 -21.62927 -18.94210 -18.12183 -17.03426 -15.55012 -14.99403 -14.66346 -14.41461 -14.04030 -13.71097 -13.61186 -13.00742 -12.65434 -12.36973 -12.26326 -11.79254 -11.48020 -11.07136 -10.86476 -10.73527 -10.50009 -10.28968 -10.15961 -9.49042 -9.28149 -8.81535 -8.30964 -7.14698 -6.56888 -4.14329 1.51058 2.08328 2.37772 2.98387 3.07740 3.10612 3.13700 3.87712 4.45834 4.87897 4.98921 5.11125 5.15009 5.27170 5.48174 5.56565 5.63498 5.89858 6.06276 6.19757 6.47774 6.57514 6.70356 6.78376 6.98853 7.14943 7.23468 7.31957 7.67429 7.87935 8.88400 9.56225 10.60458 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.005666 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.290076 B = 4940.304516 C = 5526.339801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.160 3.840 11 C -0.238 4.238 12 C -0.059 4.059 13 C -0.181 4.181 14 C -0.055 4.055 15 C -0.206 4.206 16 C -0.002 4.002 17 Cl -0.202 7.202 18 C -0.054 4.054 19 C -0.193 4.193 20 H 0.272 0.728 21 H 0.130 0.870 22 H 0.111 0.889 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -9.005 1.281 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.105 3.895 11 C -0.257 4.257 12 C -0.077 4.077 13 C -0.182 4.182 14 C -0.073 4.073 15 C -0.224 4.224 16 C -0.064 4.064 17 Cl -0.175 7.175 18 C -0.072 4.072 19 C -0.212 4.212 20 H 0.082 0.918 21 H 0.148 0.852 22 H 0.128 0.872 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.492 -8.789 1.386 12.300 hybrid contribution 0.533 0.745 0.001 0.916 sum 9.025 -8.044 1.388 12.169 Atomic orbital electron populations 1.70047 1.06042 1.27873 1.45116 1.25341 0.95880 0.99003 0.96255 0.85616 0.79179 0.80099 0.78380 1.18973 1.20033 1.19991 1.21435 0.91962 0.80681 1.52822 0.88759 1.83953 1.34648 1.11629 1.77007 1.19496 0.90267 0.88017 0.91727 1.21098 0.93777 0.98966 1.11870 1.20936 0.98226 0.91552 0.97028 1.18522 0.93181 0.92425 1.14045 1.21675 0.93023 0.96154 0.96496 1.22987 0.99733 0.99298 1.00387 1.23874 1.04383 0.97576 0.80563 1.98701 1.97175 1.93022 1.28642 1.20726 0.92541 0.96921 0.97019 1.20185 0.99755 0.90275 1.10971 0.91844 0.85240 0.87155 0.86646 0.86527 0.89040 0.86679 0.86690 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 15 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 15 3 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 15 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.39 -10.63 9.48 30.88 0.29 -10.34 15 8 H 0.10 2.35 5.19 -52.48 -0.27 2.08 15 9 O -0.17 -4.70 9.75 0.31 0.00 -4.70 15 10 C 0.16 3.72 6.65 -39.00 -0.26 3.46 15 11 C -0.24 -4.92 9.15 -39.46 -0.36 -5.28 15 12 C -0.06 -1.02 7.30 -39.22 -0.29 -1.31 15 13 C -0.18 -2.97 5.12 -104.97 -0.54 -3.50 15 14 C -0.06 -0.73 9.78 -37.60 -0.37 -1.10 15 15 C -0.21 -2.53 9.59 -36.20 -0.35 -2.88 15 16 C 0.00 -0.03 5.44 36.01 0.20 0.16 15 17 Cl -0.20 -2.74 29.13 -51.86 -1.51 -4.25 15 18 C -0.05 -0.92 9.78 -39.22 -0.38 -1.31 15 19 C -0.19 -3.91 9.98 -39.45 -0.39 -4.30 15 20 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 21 H 0.13 2.67 5.62 -52.49 -0.30 2.38 15 22 H 0.11 1.62 6.47 -52.49 -0.34 1.28 15 23 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 24 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 25 H 0.09 1.01 8.03 -51.93 -0.42 0.59 15 26 H 0.12 1.69 4.82 -51.93 -0.25 1.44 15 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.12 2.34 8.06 -52.49 -0.42 1.91 15 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -28.68 261.86 -6.77 -35.45 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.40 Total: 3.79 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.54 Total: -25.41 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.76 Total: -23.71 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: 0.00 Total: -4.70 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -1.51 Total: -4.25 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.68 -6.77 -35.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211897971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.312 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds