Wall clock time and date at job start Mon Mar 30 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48504 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47204 * 299.99829 * 3 2 1 6 6 H 1.48498 * 109.47493 * 59.99869 * 3 2 1 7 7 C 1.38648 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99655 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.35683 * 116.99717 * 185.09861 * 9 7 2 11 11 C 1.39024 * 119.92884 * 354.30077 * 10 9 7 12 12 C 1.37783 * 120.07454 * 179.97438 * 11 10 9 13 13 C 1.39645 * 119.92399 * 359.97438 * 12 11 10 14 14 C 1.47720 * 120.07344 * 179.97438 * 13 12 11 15 15 C 1.32647 * 119.99904 * 39.74862 * 14 13 12 16 16 C 1.50700 * 119.99788 * 7.15432 * 15 14 13 17 17 Cl 1.80306 * 109.46978 * 127.14692 * 16 15 14 18 18 C 1.39640 * 119.85547 * 0.24841 * 13 12 11 19 19 C 1.37786 * 119.92540 * 359.51560 * 18 13 12 20 20 H 0.97001 * 119.99506 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.96553 * 359.97438 * 11 10 9 22 22 H 1.08000 * 120.03964 * 179.97438 * 12 11 10 23 23 H 1.07999 * 120.00660 * 219.74890 * 14 13 12 24 24 H 1.08001 * 120.00027 * 186.88016 * 15 14 13 25 25 H 1.08997 * 109.46914 * 247.14072 * 16 15 14 26 26 H 1.08997 * 109.47559 * 7.14344 * 16 15 14 27 27 H 1.08001 * 120.03904 * 179.74607 * 18 13 12 28 28 H 1.07998 * 119.96249 * 180.21266 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3682 0.0005 10 6 2.0696 -3.5037 0.1085 11 6 3.4581 -3.4354 0.0932 12 6 4.2073 -4.5865 0.2031 13 6 3.5704 -5.8227 0.3307 14 6 4.3703 -7.0590 0.4482 15 6 5.4770 -7.0658 1.1794 16 6 5.8332 -5.8656 2.0184 17 17 6.1328 -6.3879 3.7179 18 6 2.1755 -5.8882 0.3411 19 6 1.4323 -4.7328 0.2356 20 1 -0.4849 0.8401 0.0004 21 1 3.9501 -2.4790 -0.0051 22 1 5.2859 -4.5329 0.1907 23 1 4.0542 -7.9573 -0.0611 24 1 6.1206 -7.9331 1.1769 25 1 6.7323 -5.3968 1.6186 26 1 5.0107 -5.1507 1.9976 27 1 1.6798 -6.8431 0.4354 28 1 0.3535 -4.7825 0.2470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211897971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:17 Heat of formation + Delta-G solvation = -17.208441 kcal Electronic energy + Delta-G solvation = -13913.231403 eV Core-core repulsion = 11341.325634 eV Total energy + Delta-G solvation = -2571.905769 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87151 -38.82112 -36.94767 -35.31327 -34.17152 -31.91654 -30.22561 -27.73910 -27.17189 -23.54335 -23.10589 -20.19530 -19.87112 -18.75510 -16.83134 -16.39843 -16.28535 -15.89954 -15.50198 -15.30739 -14.97022 -14.57161 -14.05476 -13.68674 -13.62838 -13.40379 -13.04181 -12.62393 -12.37639 -12.15821 -12.08190 -11.36319 -11.31101 -11.21350 -10.86230 -10.29777 -9.80821 -8.71178 -8.49682 -6.17091 0.23375 0.55156 1.12396 1.35313 1.43404 1.53398 1.90998 2.16221 2.83162 3.15303 3.48424 3.80884 3.99740 4.08392 4.15917 4.24402 4.47934 4.52363 4.67307 4.87410 5.01568 5.11448 5.25400 5.37667 5.50750 5.66686 5.69736 5.89114 6.00238 6.16308 6.95062 7.74446 8.73336 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.005666 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.290076 B = 4940.304516 C = 5526.339801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.118 3.882 11 C -0.245 4.245 12 C -0.058 4.058 13 C -0.153 4.153 14 C -0.073 4.073 15 C -0.177 4.177 16 C -0.011 4.011 17 Cl -0.206 7.206 18 C -0.052 4.052 19 C -0.205 4.205 20 H 0.273 0.727 21 H 0.122 0.878 22 H 0.143 0.857 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.153 0.847 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -11.337 1.501 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.135 6.135 10 C 0.068 3.932 11 C -0.264 4.264 12 C -0.076 4.076 13 C -0.154 4.154 14 C -0.091 4.091 15 C -0.195 4.195 16 C -0.072 4.072 17 Cl -0.179 7.179 18 C -0.070 4.070 19 C -0.224 4.224 20 H 0.082 0.918 21 H 0.140 0.860 22 H 0.160 0.840 23 H 0.164 0.836 24 H 0.162 0.838 25 H 0.133 0.867 26 H 0.113 0.887 27 H 0.170 0.830 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.520 -11.187 1.610 16.139 hybrid contribution -0.167 1.009 0.021 1.023 sum 11.353 -10.178 1.631 15.334 Atomic orbital electron populations 1.70189 1.08062 1.28836 1.48564 1.26600 0.96838 1.02781 0.95744 0.84529 0.78350 0.74801 0.78546 1.17290 1.19343 1.19427 1.21895 0.92627 0.81333 1.53150 0.87831 1.83924 1.36142 1.12699 1.80704 1.20055 0.91642 0.87945 0.93607 1.21198 0.93017 1.00145 1.12042 1.21266 0.99672 0.90736 0.95923 1.19023 0.93280 0.93645 1.09415 1.21766 0.93123 0.95600 0.98621 1.23272 0.98711 0.99439 0.98126 1.23962 1.04898 0.97794 0.80549 1.98710 1.97155 1.92990 1.29090 1.21158 0.93091 0.97171 0.95530 1.20441 1.00135 0.90578 1.11255 0.91768 0.86020 0.83954 0.83580 0.83754 0.86659 0.88671 0.82951 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.67 21.61 0.30 -55.54 15 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 15 3 Si 1.02 42.18 29.55 68.60 2.03 44.21 15 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 7 C -0.41 -23.71 9.48 67.92 0.64 -23.07 15 8 H 0.10 5.41 5.19 -2.91 -0.02 5.39 15 9 O -0.23 -13.55 9.75 -21.79 -0.21 -13.76 15 10 C 0.12 5.75 6.65 22.65 0.15 5.90 15 11 C -0.24 -10.22 9.15 22.35 0.20 -10.02 15 12 C -0.06 -1.87 7.30 22.50 0.16 -1.71 15 13 C -0.15 -4.48 5.12 -20.09 -0.10 -4.59 15 14 C -0.07 -1.54 9.78 23.61 0.23 -1.31 15 15 C -0.18 -3.37 9.59 24.52 0.24 -3.13 15 16 C -0.01 -0.22 5.44 71.24 0.39 0.16 15 17 Cl -0.21 -4.90 29.13 -2.72 -0.08 -4.98 15 18 C -0.05 -1.65 9.78 22.50 0.22 -1.43 15 19 C -0.20 -8.46 9.98 22.35 0.22 -8.23 15 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 21 H 0.12 5.17 5.62 -2.91 -0.02 5.15 15 22 H 0.14 3.63 6.47 -2.91 -0.02 3.61 15 23 H 0.15 2.35 8.06 -2.91 -0.02 2.33 15 24 H 0.14 2.11 8.06 -2.91 -0.02 2.09 15 25 H 0.12 1.98 8.03 -2.39 -0.02 1.96 15 26 H 0.10 2.47 4.82 -2.39 -0.01 2.46 15 27 H 0.15 3.72 8.06 -2.91 -0.02 3.70 15 28 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 Total: -1.00 -67.31 261.86 6.03 -61.28 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.18 Total: 16.98 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 2.82 Total: -48.18 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.30 Total: -55.54 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.21 Total: -13.76 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -4.90 SS G_CDS: -0.08 Total: -4.98 kcal Total: -67.31 6.03 -61.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211897971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.067 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds