Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48506 * 109.47033 * 270.00057 * 3 2 1 5 5 H 1.48500 * 109.47148 * 29.99941 * 3 2 1 6 6 H 1.48503 * 109.47204 * 150.00413 * 3 2 1 7 7 C 1.38724 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00328 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00405 * 179.97438 * 7 2 1 10 10 C 1.76200 * 100.00285 * 179.97438 * 9 7 2 11 11 N 1.31055 * 125.08918 * 0.02562 * 10 9 7 12 12 C 1.35723 * 109.63043 * 179.97438 * 11 10 9 13 13 C 1.39830 * 133.34209 * 179.97438 * 12 11 10 14 14 C 1.37614 * 119.80195 * 180.27993 * 13 12 11 15 15 C 1.38956 * 120.49508 * 359.44491 * 14 13 12 16 16 F 1.35100 * 119.79994 * 180.26344 * 15 14 13 17 17 C 1.38133 * 120.39963 * 0.55614 * 15 14 13 18 18 C 1.38695 * 119.83842 * 359.72716 * 17 15 14 19 19 N 1.36767 * 125.08845 * 180.02562 * 10 9 7 20 20 H 0.96999 * 126.39150 * 0.02562 * 19 10 9 21 21 H 0.96991 * 120.00033 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.09443 * 359.97438 * 13 12 11 23 23 H 1.08006 * 119.75037 * 179.70268 * 14 13 12 24 24 H 1.07998 * 120.08251 * 179.70183 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5475 1.4403 0.7000 7 6 2.0096 -1.2013 -0.0005 8 1 1.4697 -2.1367 -0.0005 9 16 3.7716 -1.2013 -0.0012 10 6 4.0776 -2.9366 -0.0010 11 7 3.1524 -3.8647 -0.0009 12 6 3.7359 -5.0901 -0.0012 13 6 3.2303 -6.3938 -0.0009 14 6 4.0964 -7.4633 0.0044 15 6 5.4707 -7.2578 -0.0022 16 9 6.3081 -8.3179 -0.0023 17 6 5.9858 -5.9761 -0.0026 18 6 5.1268 -4.8871 -0.0021 19 7 5.3163 -3.5164 -0.0008 20 1 6.1686 -3.0532 -0.0005 21 1 -0.4850 0.8400 0.0004 22 1 2.1633 -6.5609 0.0003 23 1 3.7050 -8.4699 0.0096 24 1 7.0547 -5.8223 -0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212962105.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -2.817025 kcal Electronic energy + Delta-G solvation = -13560.325325 eV Core-core repulsion = 10899.919767 eV Total energy + Delta-G solvation = -2660.405558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.85892 -42.88729 -37.87627 -34.78032 -34.16233 -31.10985 -29.99206 -27.94320 -24.68096 -23.51589 -22.60569 -20.27858 -19.42455 -18.33828 -17.72233 -17.15818 -16.74918 -16.49015 -16.06794 -16.05159 -15.05511 -14.91624 -14.19921 -14.08230 -13.58373 -13.14768 -13.11555 -12.60859 -12.48995 -11.96211 -11.87290 -11.29949 -11.18118 -10.87862 -10.05729 -9.41276 -8.67961 -8.52538 -6.34192 -0.26585 0.34494 0.43662 1.32730 1.35940 1.45162 1.58425 1.93553 2.18830 2.48332 2.69198 2.85528 3.28979 3.44349 3.87094 4.09384 4.16912 4.29354 4.71469 4.93669 5.05273 5.17419 5.46266 5.73760 5.81522 6.24919 6.37054 6.82929 6.83778 8.60883 Molecular weight = 238.03amu Principal moments of inertia in cm(-1) A = 0.063305 B = 0.005823 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.199605 B = 4807.533753 C = 5239.890288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.046 3.954 3 Si 0.911 3.089 4 H -0.252 1.252 5 H -0.255 1.255 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.075 0.925 9 S 0.088 5.912 10 C 0.267 3.733 11 N -0.533 5.533 12 C 0.016 3.984 13 C -0.056 4.056 14 C -0.143 4.143 15 C 0.102 3.898 16 F -0.134 7.134 17 C -0.136 4.136 18 C 0.062 3.938 19 N -0.577 5.577 20 H 0.440 0.560 21 H 0.281 0.719 22 H 0.143 0.857 23 H 0.171 0.829 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 -8.463 0.116 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.730 3.270 4 H -0.176 1.176 5 H -0.179 1.179 6 H -0.140 1.140 7 C -0.699 4.699 8 H 0.093 0.907 9 S 0.322 5.678 10 C -0.106 4.106 11 N -0.258 5.258 12 C -0.106 4.106 13 C -0.076 4.076 14 C -0.164 4.164 15 C 0.080 3.920 16 F -0.113 7.113 17 C -0.159 4.159 18 C -0.051 4.051 19 N -0.194 5.194 20 H 0.283 0.717 21 H 0.091 0.909 22 H 0.160 0.840 23 H 0.189 0.811 24 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.332 -7.277 0.119 15.190 hybrid contribution -0.028 -0.391 -0.033 0.393 sum 13.305 -7.668 0.085 15.357 Atomic orbital electron populations 1.70007 1.07846 1.29475 1.47243 1.25725 0.95522 1.02499 0.92351 0.85980 0.81129 0.78848 0.81007 1.17619 1.17878 1.13977 1.22591 0.89562 0.98124 1.59605 0.90715 1.82222 1.08425 0.88488 1.88690 1.25981 0.82347 1.01779 1.00515 1.71055 1.31243 0.98159 1.25370 1.19858 0.90847 0.93722 1.06145 1.20310 1.01006 0.87700 0.98631 1.21044 0.90581 1.00657 1.04078 1.17120 0.87761 0.82712 1.04397 1.91495 1.71102 1.54573 1.94109 1.19809 1.00402 0.88127 1.07539 1.18665 0.95674 0.84517 1.06280 1.42826 1.08387 1.04067 1.64099 0.71727 0.90938 0.83953 0.81132 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.16 13.97 21.63 0.30 -53.86 14 2 C 0.05 2.54 5.50 84.85 0.47 3.01 14 3 Si 0.91 38.86 27.73 68.60 1.90 40.76 14 4 H -0.25 -10.32 7.11 99.48 0.71 -9.61 14 5 H -0.25 -10.40 7.11 99.48 0.71 -9.69 14 6 H -0.22 -8.35 6.74 99.48 0.67 -7.68 14 7 C -0.55 -31.52 9.89 67.94 0.67 -30.85 14 8 H 0.07 4.92 7.08 -2.91 -0.02 4.90 14 9 S 0.09 3.92 19.86 -56.49 -1.12 2.79 14 10 C 0.27 11.49 8.19 179.54 1.47 12.96 14 11 N -0.53 -25.56 9.96 -188.24 -1.88 -27.44 14 12 C 0.02 0.61 7.22 39.49 0.29 0.89 14 13 C -0.06 -1.74 10.10 22.51 0.23 -1.52 14 14 C -0.14 -3.46 9.99 22.29 0.22 -3.24 14 15 C 0.10 2.50 7.29 22.42 0.16 2.66 14 16 F -0.13 -3.05 17.26 44.97 0.78 -2.28 14 17 C -0.14 -3.45 10.04 22.35 0.22 -3.22 14 18 C 0.06 2.01 7.29 38.79 0.28 2.30 14 19 N -0.58 -18.80 6.28 -187.26 -1.18 -19.98 14 20 H 0.44 10.41 8.96 -92.71 -0.83 9.58 14 21 H 0.28 15.23 8.31 -92.71 -0.77 14.46 14 22 H 0.14 4.17 8.06 -2.91 -0.02 4.15 14 23 H 0.17 2.94 8.06 -2.91 -0.02 2.92 14 24 H 0.16 3.01 8.06 -2.91 -0.02 2.99 14 Total: -1.00 -68.20 240.06 3.21 -64.99 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.39 Total: 12.03 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 4.02 Total: -17.01 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -2.75 Total: -101.28 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.90 Total: 40.76 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.12 Total: 2.79 kcal Total: -68.20 3.21 -64.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212962105.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.170 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds