Wall clock time and date at job start Mon Mar 30 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47219 * 299.99837 * 3 2 1 6 6 H 1.48504 * 109.47057 * 59.99884 * 3 2 1 7 7 C 1.37877 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.33953 * 124.92632 * 90.00101 * 10 9 7 12 12 C 1.46823 * 106.18197 * 179.97438 * 11 10 9 13 13 C 1.40450 * 105.51510 * 359.97438 * 12 11 10 14 14 C 1.38913 * 119.36417 * 179.75827 * 13 12 11 15 15 C 1.38070 * 119.98304 * 0.48216 * 14 13 12 16 16 F 1.35097 * 119.67353 * 179.77946 * 15 14 13 17 17 C 1.38907 * 120.65447 * 359.51224 * 15 14 13 18 18 C 1.37955 * 120.22091 * 0.24586 * 17 15 14 19 19 F 1.35102 * 120.20351 * 180.02562 * 18 17 15 20 20 O 1.34497 * 124.92212 * 269.97117 * 10 9 7 21 21 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47323 * 59.99911 * 9 7 2 23 23 H 1.09002 * 109.47246 * 299.99944 * 9 7 2 24 24 H 1.08000 * 126.91081 * 359.97438 * 11 10 9 25 25 H 1.07998 * 120.01176 * 180.29740 * 14 13 12 26 26 H 1.07999 * 119.88391 * 180.26475 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6446 0.0018 11 6 2.7280 -4.2270 1.1007 12 6 3.6315 -5.2843 0.6301 13 6 3.5804 -5.2254 -0.7723 14 6 4.3449 -6.1124 -1.5196 15 6 5.1371 -7.0468 -0.8827 16 9 5.8746 -7.9094 -1.6156 17 6 5.1876 -7.1051 0.5043 18 6 4.4396 -6.2295 1.2638 19 9 4.4894 -6.2862 2.6127 20 8 2.7313 -4.2306 -1.1003 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.5087 -3.9704 2.1266 25 1 4.3173 -6.0732 -2.5985 26 1 5.8149 -7.8382 0.9895 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215348645.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:58 Heat of formation + Delta-G solvation = -73.675077 kcal Electronic energy + Delta-G solvation = -15734.747598 eV Core-core repulsion = 12608.596572 eV Total energy + Delta-G solvation = -3126.151026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.01966 -48.88504 -42.11312 -37.32251 -33.76341 -32.27252 -30.46775 -30.02953 -26.98768 -23.87002 -23.04349 -21.71649 -20.67475 -18.21925 -17.10142 -16.75417 -16.55432 -16.11011 -15.74258 -15.32226 -15.23488 -15.15054 -14.69051 -14.25046 -13.24725 -12.56882 -12.52915 -12.33658 -12.05293 -11.65832 -11.47268 -11.33043 -10.93017 -10.73451 -10.09709 -9.88055 -9.46324 -8.64808 -8.62916 -7.64123 -6.24729 -4.31033 0.79223 1.13188 2.79816 2.91764 3.20902 3.29044 3.34431 3.45524 3.93160 4.29904 4.47658 4.58848 4.77772 4.97520 5.08858 5.13181 5.67288 5.81412 5.91340 6.00493 6.06511 6.35203 6.62454 6.78444 7.03257 7.17686 7.68270 7.69648 7.96743 8.71826 9.34404 10.84818 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.037181 B = 0.005675 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.899047 B = 4932.549533 C = 5182.504460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.079 3.921 10 C 0.111 3.889 11 C -0.239 4.239 12 C -0.158 4.158 13 C 0.091 3.909 14 C -0.147 4.147 15 C 0.132 3.868 16 F -0.130 7.130 17 C -0.209 4.209 18 C 0.166 3.834 19 F -0.128 7.128 20 O -0.180 6.180 21 H 0.266 0.734 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.159 0.841 25 H 0.148 0.852 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 -11.583 -0.023 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.043 3.957 10 C 0.063 3.937 11 C -0.257 4.257 12 C -0.160 4.160 13 C 0.042 3.958 14 C -0.167 4.167 15 C 0.112 3.888 16 F -0.109 7.109 17 C -0.229 4.229 18 C 0.146 3.854 19 F -0.106 7.106 20 O -0.081 6.081 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.177 0.823 25 H 0.166 0.834 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.119 -11.421 -0.267 13.461 hybrid contribution 0.645 0.686 0.286 0.984 sum 7.764 -10.735 0.019 13.248 Atomic orbital electron populations 1.69938 1.06070 1.27380 1.49364 1.24979 0.94982 0.99509 0.94516 0.86340 0.80078 0.82705 0.77825 1.19518 1.20687 1.20680 1.20986 0.93375 0.89133 1.52746 0.91896 1.18297 0.90816 0.86212 1.00396 1.23924 0.94766 0.93255 0.81717 1.22026 1.03909 0.99511 1.00295 1.20053 1.02092 0.99829 0.93995 1.18837 0.94047 0.91262 0.91646 1.19578 0.99716 0.96416 1.00949 1.16446 0.93921 0.90493 0.87896 1.91512 1.74715 1.67609 1.77048 1.20684 1.05818 1.03977 0.92431 1.16486 0.96779 0.95320 0.76773 1.91505 1.94967 1.95530 1.28615 1.84151 1.49068 1.39262 1.35610 0.92424 0.93627 0.92008 0.82291 0.83448 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 13.29 55.43 0.74 -24.09 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 15 9 C 0.08 1.92 5.48 -29.03 -0.16 1.76 15 10 C 0.11 2.37 6.42 -35.81 -0.23 2.14 15 11 C -0.24 -4.66 11.01 -37.62 -0.41 -5.08 15 12 C -0.16 -2.83 6.38 -105.10 -0.67 -3.50 15 13 C 0.09 1.62 7.41 -38.50 -0.29 1.33 15 14 C -0.15 -2.13 10.03 -39.39 -0.40 -2.53 15 15 C 0.13 1.77 7.28 -39.40 -0.29 1.49 15 16 F -0.13 -1.64 17.25 2.25 0.04 -1.61 15 17 C -0.21 -2.77 9.99 -39.44 -0.39 -3.17 15 18 C 0.17 2.59 7.34 -39.19 -0.29 2.30 15 19 F -0.13 -1.98 17.28 2.25 0.04 -1.94 15 20 O -0.18 -3.69 10.58 3.68 0.04 -3.65 15 21 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.05 1.15 8.14 -51.93 -0.42 0.72 15 23 H 0.06 1.51 8.14 -51.93 -0.42 1.08 15 24 H 0.16 2.88 8.06 -52.49 -0.42 2.46 15 25 H 0.15 1.80 8.06 -52.49 -0.42 1.38 15 26 H 0.15 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 251.65 15.07 3.79 3.79 Total: -1.00 -27.17 251.65 -5.56 -32.73 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -1.65 Total: -2.94 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.53 Total: -17.96 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.74 Total: -24.09 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.17 -5.56 -32.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215348645.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.943 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds