Wall clock time and date at job start Mon Mar 30 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86800 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47257 * 270.00289 * 3 2 1 5 5 H 1.48497 * 109.47027 * 30.00194 * 3 2 1 6 6 H 1.48498 * 109.47058 * 150.00136 * 3 2 1 7 7 C 1.39851 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99696 * 163.16076 * 7 2 1 9 9 C 1.41105 * 120.00392 * 343.15802 * 7 2 1 10 10 C 1.40906 * 120.15584 * 334.47016 * 9 7 2 11 11 C 1.37603 * 119.57400 * 179.97438 * 10 9 7 12 12 C 1.39567 * 120.35030 * 0.03862 * 11 10 9 13 13 C 1.38966 * 120.48943 * 359.92603 * 12 11 10 14 14 C 1.37834 * 120.00195 * 0.05139 * 13 12 11 15 15 F 1.35098 * 120.05095 * 180.02562 * 14 13 12 16 16 O 1.36308 * 119.47408 * 179.97438 * 12 11 10 17 17 C 1.42860 * 115.94534 * 291.80120 * 16 12 11 18 18 C 1.52049 * 110.82998 * 84.57131 * 17 16 12 19 19 C 1.52054 * 112.39447 * 295.05964 * 18 17 16 20 20 O 1.36555 * 120.12158 * 180.10599 * 11 10 9 21 21 H 0.97001 * 119.99709 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.21221 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.99506 * 180.02562 * 13 12 11 24 24 H 1.09007 * 109.20588 * 324.22368 * 17 16 12 25 25 H 1.08998 * 109.16801 * 204.89828 * 17 16 12 26 26 H 1.09005 * 108.89868 * 174.31015 * 18 17 16 27 27 H 1.08999 * 108.82165 * 55.75833 * 18 17 16 28 28 H 1.09000 * 109.21543 * 185.18937 * 19 18 17 29 29 H 1.09001 * 109.21422 * 304.57031 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4906 2.0465 -1.4001 5 1 1.4406 2.6526 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0084 -1.2111 -0.0005 8 1 3.0538 -1.2310 -0.2715 9 6 1.3484 -2.4072 0.3530 10 6 0.2173 -2.3699 1.1924 11 6 -0.4175 -3.5435 1.5291 12 6 0.0540 -4.7644 1.0445 13 6 1.1683 -4.8111 0.2155 14 6 1.8172 -3.6461 -0.1332 15 9 2.9003 -3.6902 -0.9395 16 8 -0.5882 -5.9161 1.3898 17 6 -0.4893 -6.2995 2.7625 18 6 -1.5472 -5.5960 3.5979 19 6 -1.3453 -4.0895 3.6392 20 8 -1.5158 -3.5202 2.3402 21 1 -0.4850 0.8401 0.0004 22 1 -0.1490 -1.4264 1.5692 23 1 1.5261 -5.7602 -0.1553 24 1 0.4990 -6.0347 3.1384 25 1 -0.6267 -7.3777 2.8437 26 1 -1.5100 -5.9852 4.6154 27 1 -2.5287 -5.8091 3.1745 28 1 -2.0716 -3.6488 4.3222 29 1 -0.3388 -3.8721 3.9967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215352948.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:12 Heat of formation + Delta-G solvation = -125.949332 kcal Electronic energy + Delta-G solvation = -16979.794536 eV Core-core repulsion = 13974.837032 eV Total energy + Delta-G solvation = -3004.957503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.29593 -41.32427 -38.21292 -38.12731 -35.53647 -33.45213 -31.35757 -30.10372 -27.52485 -26.62667 -23.72531 -22.50015 -22.29383 -19.74675 -18.96146 -18.09490 -17.97030 -16.93700 -16.50050 -16.21134 -16.02892 -15.76357 -15.03479 -14.93185 -14.74141 -14.43525 -14.34187 -13.73529 -13.50402 -12.96909 -12.67414 -12.33753 -12.24492 -12.04053 -11.82682 -11.53285 -11.18209 -11.07613 -10.64766 -9.54614 -9.17790 -8.76611 -6.50635 0.47446 0.63614 1.37546 1.43518 1.54147 2.15935 2.38104 2.75070 2.94515 3.35053 3.83814 3.93600 4.04082 4.16346 4.31233 4.49499 4.54774 4.68966 4.77318 4.84672 4.93837 5.07693 5.10490 5.13790 5.25913 5.71968 5.77499 5.83614 6.22953 6.43740 6.59765 6.64409 6.99392 8.15985 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.030914 B = 0.008564 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.511501 B = 3268.591377 C = 3979.272105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.069 3.931 10 C -0.166 4.166 11 C 0.082 3.918 12 C -0.048 4.048 13 C -0.111 4.111 14 C -0.048 4.048 15 F -0.160 7.160 16 O -0.333 6.333 17 C 0.044 3.956 18 C -0.175 4.175 19 C 0.049 3.951 20 O -0.347 6.347 21 H 0.297 0.703 22 H 0.124 0.876 23 H 0.136 0.864 24 H 0.049 0.951 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -4.232 7.632 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.503 4.503 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.186 4.186 11 C 0.038 3.962 12 C -0.092 4.092 13 C -0.130 4.130 14 C -0.069 4.069 15 F -0.139 7.139 16 O -0.250 6.250 17 C -0.031 4.031 18 C -0.212 4.212 19 C -0.025 4.025 20 O -0.265 6.265 21 H 0.108 0.892 22 H 0.141 0.859 23 H 0.153 0.847 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.292 -4.140 7.443 8.615 hybrid contribution 0.597 0.608 -0.182 0.872 sum -0.694 -3.532 7.261 8.105 Atomic orbital electron populations 1.69885 1.09183 1.31635 1.32592 1.26902 0.95559 1.04918 0.90759 0.85056 0.79100 0.74927 0.79842 1.18481 1.18373 1.17883 1.19745 0.98392 0.91893 1.40318 0.89813 1.17803 0.92676 0.92059 0.90889 1.20958 0.98025 0.96785 1.02834 1.19102 0.88859 0.92681 0.95548 1.18289 0.98011 0.84843 1.08079 1.20524 0.94514 0.97104 1.00902 1.17658 0.91821 0.94782 1.02609 1.91264 1.53251 1.97311 1.72063 1.86234 1.72377 1.38570 1.27834 1.22898 0.98404 1.00844 0.80943 1.22400 1.00796 0.95158 1.02848 1.22855 1.02543 0.94453 0.82661 1.86258 1.32619 1.81259 1.26367 0.89201 0.85865 0.84650 0.93291 0.85992 0.85951 0.90847 0.86152 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.39 10.96 21.81 0.24 -41.15 15 2 C 0.04 1.77 5.15 85.22 0.44 2.21 15 3 Si 0.99 36.72 29.59 68.60 2.03 38.75 15 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 5 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 7 C -0.48 -25.55 8.76 23.36 0.20 -25.34 15 8 H 0.08 4.40 7.73 -2.91 -0.02 4.38 15 9 C 0.07 3.80 5.57 -21.22 -0.12 3.68 15 10 C -0.17 -8.86 8.61 22.77 0.20 -8.66 15 11 C 0.08 4.02 5.72 22.44 0.13 4.15 15 12 C -0.05 -2.23 5.76 22.77 0.13 -2.10 15 13 C -0.11 -5.24 9.95 22.35 0.22 -5.02 15 14 C -0.05 -2.52 7.30 22.88 0.17 -2.35 15 15 F -0.16 -8.12 16.71 44.97 0.75 -7.37 15 16 O -0.33 -13.67 10.15 -82.45 -0.84 -14.51 15 17 C 0.04 1.30 6.50 71.67 0.47 1.76 15 18 C -0.17 -4.49 5.92 29.97 0.18 -4.31 15 19 C 0.05 1.55 6.51 71.67 0.47 2.02 15 20 O -0.35 -15.37 10.15 -85.35 -0.87 -16.24 15 21 H 0.30 13.53 8.30 -92.71 -0.77 12.76 15 22 H 0.12 6.80 6.20 -2.91 -0.02 6.78 15 23 H 0.14 5.62 8.06 -2.91 -0.02 5.60 15 24 H 0.05 1.45 7.93 -2.38 -0.02 1.43 15 25 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.12 2.07 8.14 -2.38 -0.02 2.05 15 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 15 29 H 0.05 1.57 7.93 -2.39 -0.02 1.55 15 Total: -1.00 -62.72 253.36 4.97 -57.75 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.17 Total: 16.72 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 2.48 Total: -33.95 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.24 Total: -41.15 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.70 Total: -30.75 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.75 Total: -7.37 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -62.72 4.97 -57.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215352948.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.202 kcal (2) G-P(sol) polarization free energy of solvation -62.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds