Wall clock time and date at job start Mon Mar 30 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30936 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47395 * 273.08046 * 3 2 1 5 5 H 1.48499 * 109.47494 * 33.07993 * 3 2 1 6 6 H 1.48500 * 109.47002 * 153.08148 * 3 2 1 7 7 C 1.39822 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99757 * 345.22867 * 7 2 1 9 9 C 1.41057 * 119.99761 * 165.23767 * 7 2 1 10 10 C 1.40950 * 120.13633 * 331.30904 * 9 7 2 11 11 C 1.36289 * 119.88534 * 179.97438 * 10 9 7 12 12 C 1.39638 * 120.17143 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.86278 * 180.02562 * 12 11 10 14 14 C 1.81001 * 99.99943 * 5.94503 * 13 12 11 15 15 C 1.52993 * 117.49779 * 245.14165 * 14 13 12 16 16 C 1.53001 * 117.49556 * 176.48422 * 14 13 12 17 17 C 1.39901 * 120.27592 * 359.97438 * 12 11 10 18 18 F 1.35094 * 119.94448 * 179.97438 * 17 12 11 19 19 C 1.36434 * 120.11197 * 0.02562 * 17 12 11 20 20 H 0.97003 * 119.99598 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.05967 * 359.70534 * 10 9 7 22 22 H 1.08004 * 119.91672 * 180.02562 * 11 10 9 23 23 H 1.08998 * 115.54785 * 30.81302 * 14 13 12 24 24 H 1.09001 * 117.50346 * 0.02562 * 15 14 13 25 25 H 1.09009 * 117.49525 * 145.02263 * 15 14 13 26 26 H 1.08998 * 117.49669 * 214.98129 * 16 14 13 27 27 H 1.08996 * 117.50147 * 0.02562 * 16 14 13 28 28 H 1.07999 * 120.08551 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4257 2.0841 -1.3981 5 1 1.4749 2.6330 0.7641 6 1 3.5720 1.4222 0.6339 7 6 2.0084 -1.2109 -0.0005 8 1 1.4952 -2.1308 0.2375 9 6 3.3841 -1.2309 -0.3118 10 6 3.9298 -0.2547 -1.1697 11 6 5.2597 -0.2785 -1.4666 12 6 6.0824 -1.2676 -0.9236 13 16 7.8008 -1.2903 -1.3124 14 6 7.9300 0.2489 -2.2559 15 6 8.2952 0.1407 -3.7376 16 6 9.3213 0.6704 -2.7329 17 6 5.5481 -2.2399 -0.0714 18 9 6.3500 -3.1941 0.4497 19 6 4.2183 -2.2269 0.2335 20 1 -0.4850 0.8401 0.0004 21 1 3.2943 0.5083 -1.5945 22 1 5.6785 0.4695 -2.1235 23 1 7.2372 1.0384 -1.9646 24 1 8.4572 -0.8574 -4.1445 25 1 7.8428 0.8594 -4.4212 26 1 9.5437 1.7372 -2.7558 27 1 10.1587 0.0206 -2.4790 28 1 3.8064 -2.9774 0.8918 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215371523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:35 Heat of formation + Delta-G solvation = -3.143044 kcal Electronic energy + Delta-G solvation = -14110.001979 eV Core-core repulsion = 11553.122627 eV Total energy + Delta-G solvation = -2556.879352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.01526 -37.80484 -36.65148 -33.82089 -30.76340 -29.68302 -25.68177 -23.17718 -22.40209 -21.35662 -21.09187 -17.96790 -16.94501 -16.48501 -15.50207 -15.24497 -15.14702 -14.72626 -14.26997 -13.43040 -13.21419 -12.80677 -12.24221 -12.15189 -11.83314 -11.59648 -11.27315 -11.17733 -10.88852 -10.65910 -10.38340 -10.19609 -9.82064 -9.74380 -9.37142 -8.58358 -7.88924 -7.20819 -6.78444 -4.70404 2.14846 2.26951 2.38010 2.93466 3.03737 3.07570 3.15748 3.75595 3.78064 4.16845 4.83277 4.92659 4.99760 5.10730 5.25601 5.56973 5.66321 5.78882 5.97728 6.09150 6.14021 6.34143 6.48567 6.87798 7.02019 7.12820 7.16487 7.56371 7.81090 8.06848 8.32577 8.50260 9.79716 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.008232 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.655903 B = 3400.533934 C = 4154.971620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.081 3.919 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.241 1.241 7 C -0.423 4.423 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.238 4.238 11 C -0.049 4.049 12 C -0.263 4.263 13 S -0.090 6.090 14 C -0.154 4.154 15 C -0.162 4.162 16 C -0.153 4.153 17 C 0.159 3.841 18 F -0.154 7.154 19 C -0.239 4.239 20 H 0.291 0.709 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.891 3.442 -3.966 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.140 4.140 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.451 4.451 8 H 0.115 0.885 9 C 0.107 3.893 10 C -0.259 4.259 11 C -0.071 4.071 12 C -0.375 4.375 13 S 0.151 5.849 14 C -0.283 4.283 15 C -0.203 4.203 16 C -0.192 4.192 17 C 0.135 3.865 18 F -0.132 7.132 19 C -0.260 4.260 20 H 0.101 0.899 21 H 0.126 0.874 22 H 0.127 0.873 23 H 0.142 0.858 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.532 2.681 -3.637 11.460 hybrid contribution -0.861 1.507 -0.215 1.749 sum 9.671 4.188 -3.851 11.221 Atomic orbital electron populations 1.69700 1.08116 1.30906 1.32766 1.26280 0.94912 1.02116 0.90739 0.86232 0.81178 0.79095 0.79091 1.19414 1.21603 1.16404 1.19555 0.91749 0.96157 1.37607 0.88478 1.17532 0.93014 0.90037 0.88728 1.20733 0.94842 1.04472 1.05846 1.20276 0.93491 0.95747 0.97547 1.20838 0.95975 1.06301 1.14428 1.84696 1.07432 1.25942 1.66817 1.24314 1.02802 1.01489 0.99678 1.23261 1.02535 1.03148 0.91318 1.22912 0.91754 1.01727 1.02815 1.16768 0.88308 0.86602 0.94799 1.91384 1.73994 1.62542 1.85314 1.20609 0.90814 1.06112 1.08490 0.89874 0.87385 0.87339 0.85845 0.87859 0.88509 0.88161 0.88321 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 13.93 55.54 0.77 -19.09 15 2 C 0.08 2.00 5.45 -17.34 -0.09 1.90 15 3 Si 0.92 19.67 24.39 -169.99 -4.15 15.53 15 4 H -0.27 -5.51 6.63 56.52 0.37 -5.14 15 5 H -0.29 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.24 -5.34 6.72 56.52 0.38 -4.96 15 7 C -0.42 -10.86 9.58 -37.92 -0.36 -11.23 15 8 H 0.10 2.59 8.06 -52.49 -0.42 2.16 15 9 C 0.11 2.74 5.17 -106.79 -0.55 2.19 15 10 C -0.24 -5.52 6.97 -39.26 -0.27 -5.80 15 11 C -0.05 -1.04 9.06 -39.76 -0.36 -1.40 15 12 C -0.26 -5.74 6.15 -38.44 -0.24 -5.98 15 13 S -0.09 -1.67 21.88 -107.50 -2.35 -4.03 15 14 C -0.15 -2.31 5.06 -26.73 -0.14 -2.44 15 15 C -0.16 -1.99 10.29 -26.70 -0.27 -2.27 15 16 C -0.15 -1.78 10.30 -26.70 -0.27 -2.05 15 17 C 0.16 3.65 7.23 -39.61 -0.29 3.37 15 18 F -0.15 -3.41 16.74 2.25 0.04 -3.37 15 19 C -0.24 -5.64 9.70 -39.23 -0.38 -6.02 15 20 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 21 H 0.11 2.44 4.26 -52.49 -0.22 2.21 15 22 H 0.11 2.03 5.31 -52.48 -0.28 1.75 15 23 H 0.12 1.89 6.15 -51.93 -0.32 1.57 15 24 H 0.10 1.28 8.14 -51.93 -0.42 0.85 15 25 H 0.10 1.04 8.14 -51.92 -0.42 0.61 15 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 28 H 0.12 2.62 8.06 -52.49 -0.42 2.20 15 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -26.07 255.06 -7.62 -33.68 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.54 Total: 3.16 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -3.23 Total: -29.73 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.77 Total: -19.09 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.15 Total: 15.53 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.35 Total: -4.03 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.07 -7.62 -33.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215371523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.539 kcal (2) G-P(sol) polarization free energy of solvation -26.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds