Wall clock time and date at job start Mon Mar 30 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30936 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47395 * 273.08046 * 3 2 1 5 5 H 1.48499 * 109.47494 * 33.07993 * 3 2 1 6 6 H 1.48500 * 109.47002 * 153.08148 * 3 2 1 7 7 C 1.39822 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99757 * 345.22867 * 7 2 1 9 9 C 1.41057 * 119.99761 * 165.23767 * 7 2 1 10 10 C 1.40950 * 120.13633 * 331.30904 * 9 7 2 11 11 C 1.36289 * 119.88534 * 179.97438 * 10 9 7 12 12 C 1.39638 * 120.17143 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.86278 * 180.02562 * 12 11 10 14 14 C 1.81001 * 99.99943 * 5.94503 * 13 12 11 15 15 C 1.52993 * 117.49779 * 245.14165 * 14 13 12 16 16 C 1.53001 * 117.49556 * 176.48422 * 14 13 12 17 17 C 1.39901 * 120.27592 * 359.97438 * 12 11 10 18 18 F 1.35094 * 119.94448 * 179.97438 * 17 12 11 19 19 C 1.36434 * 120.11197 * 0.02562 * 17 12 11 20 20 H 0.97003 * 119.99598 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.05967 * 359.70534 * 10 9 7 22 22 H 1.08004 * 119.91672 * 180.02562 * 11 10 9 23 23 H 1.08998 * 115.54785 * 30.81302 * 14 13 12 24 24 H 1.09001 * 117.50346 * 0.02562 * 15 14 13 25 25 H 1.09009 * 117.49525 * 145.02263 * 15 14 13 26 26 H 1.08998 * 117.49669 * 214.98129 * 16 14 13 27 27 H 1.08996 * 117.50147 * 0.02562 * 16 14 13 28 28 H 1.07999 * 120.08551 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4257 2.0841 -1.3981 5 1 1.4749 2.6330 0.7641 6 1 3.5720 1.4222 0.6339 7 6 2.0084 -1.2109 -0.0005 8 1 1.4952 -2.1308 0.2375 9 6 3.3841 -1.2309 -0.3118 10 6 3.9298 -0.2547 -1.1697 11 6 5.2597 -0.2785 -1.4666 12 6 6.0824 -1.2676 -0.9236 13 16 7.8008 -1.2903 -1.3124 14 6 7.9300 0.2489 -2.2559 15 6 8.2952 0.1407 -3.7376 16 6 9.3213 0.6704 -2.7329 17 6 5.5481 -2.2399 -0.0714 18 9 6.3500 -3.1941 0.4497 19 6 4.2183 -2.2269 0.2335 20 1 -0.4850 0.8401 0.0004 21 1 3.2943 0.5083 -1.5945 22 1 5.6785 0.4695 -2.1235 23 1 7.2372 1.0384 -1.9646 24 1 8.4572 -0.8574 -4.1445 25 1 7.8428 0.8594 -4.4212 26 1 9.5437 1.7372 -2.7558 27 1 10.1587 0.0206 -2.4790 28 1 3.8064 -2.9774 0.8918 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215371523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:35 Heat of formation + Delta-G solvation = -15.964739 kcal Electronic energy + Delta-G solvation = -14110.557970 eV Core-core repulsion = 11553.122627 eV Total energy + Delta-G solvation = -2557.435342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.81201 -39.60798 -37.66373 -35.65798 -32.58086 -31.49477 -27.51816 -24.56875 -23.31117 -23.12048 -22.67577 -19.82002 -18.52697 -17.74995 -17.29751 -17.06101 -16.71619 -16.52353 -15.54343 -14.99937 -14.95734 -14.43513 -14.01075 -13.77460 -13.40759 -13.04038 -12.74008 -12.64296 -12.43935 -12.02670 -11.82958 -11.62267 -11.44248 -11.35925 -10.96638 -10.29916 -9.67852 -9.04355 -8.37482 -6.59229 0.36535 0.55513 0.87124 1.22086 1.37278 1.46176 1.56001 2.04617 2.34670 2.75810 3.22899 3.45852 3.76908 3.91123 4.00954 4.09202 4.34304 4.58132 4.66585 4.73001 4.81034 5.01777 5.07459 5.18897 5.21204 5.33093 5.35557 5.69019 5.97153 6.14882 6.46433 6.60142 8.02248 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.008232 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.655903 B = 3400.533934 C = 4154.971620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.049 3.951 3 Si 0.967 3.033 4 H -0.247 1.247 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.459 4.459 8 H 0.066 0.934 9 C 0.099 3.901 10 C -0.244 4.244 11 C -0.048 4.048 12 C -0.257 4.257 13 S -0.100 6.100 14 C -0.181 4.181 15 C -0.152 4.152 16 C -0.130 4.130 17 C 0.143 3.857 18 F -0.151 7.151 19 C -0.252 4.252 20 H 0.301 0.699 21 H 0.117 0.883 22 H 0.143 0.857 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.312 5.547 -5.480 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.095 3.905 10 C -0.264 4.264 11 C -0.069 4.069 12 C -0.370 4.370 13 S 0.141 5.859 14 C -0.310 4.310 15 C -0.192 4.192 16 C -0.169 4.169 17 C 0.120 3.880 18 F -0.129 7.129 19 C -0.273 4.273 20 H 0.112 0.888 21 H 0.134 0.866 22 H 0.161 0.839 23 H 0.142 0.858 24 H 0.119 0.881 25 H 0.136 0.864 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.958 4.772 -5.161 14.742 hybrid contribution -1.393 0.770 0.202 1.605 sum 11.565 5.542 -4.959 13.750 Atomic orbital electron populations 1.69711 1.09131 1.32269 1.34172 1.26915 0.95496 1.04375 0.90042 0.85487 0.79428 0.75965 0.80156 1.17232 1.20077 1.17687 1.19507 0.92676 0.95905 1.40679 0.91558 1.17641 0.92655 0.90944 0.89249 1.20906 0.95866 1.04223 1.05413 1.20638 0.92738 0.96135 0.97438 1.21275 0.98451 1.04929 1.12318 1.84718 1.04212 1.29187 1.67757 1.24412 1.05876 0.99408 1.01303 1.23375 1.02048 1.03797 0.89963 1.23086 0.90087 1.03403 1.00289 1.16926 0.88199 0.87332 0.95576 1.91382 1.73758 1.62486 1.85320 1.20733 0.91446 1.06294 1.08849 0.88809 0.86556 0.83946 0.85821 0.88075 0.86353 0.85486 0.87966 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.50 13.93 21.81 0.30 -42.19 15 2 C 0.05 2.49 5.45 85.21 0.46 2.95 15 3 Si 0.97 39.60 24.39 68.60 1.67 41.28 15 4 H -0.25 -9.26 6.63 99.48 0.66 -8.60 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 6 H -0.25 -10.78 6.72 99.48 0.67 -10.11 15 7 C -0.46 -24.60 9.58 23.35 0.22 -24.38 15 8 H 0.07 3.81 8.06 -2.91 -0.02 3.78 15 9 C 0.10 4.97 5.17 -21.27 -0.11 4.86 15 10 C -0.24 -11.01 6.97 22.48 0.16 -10.85 15 11 C -0.05 -1.93 9.06 22.15 0.20 -1.73 15 12 C -0.26 -10.83 6.15 23.01 0.14 -10.69 15 13 S -0.10 -3.49 21.88 -56.49 -1.24 -4.73 15 14 C -0.18 -4.72 5.06 30.59 0.15 -4.57 15 15 C -0.15 -3.04 10.29 30.61 0.32 -2.72 15 16 C -0.13 -2.40 10.30 30.62 0.32 -2.08 15 17 C 0.14 6.57 7.23 22.25 0.16 6.73 15 18 F -0.15 -6.65 16.74 44.97 0.75 -5.89 15 19 C -0.25 -12.16 9.70 22.50 0.22 -11.94 15 20 H 0.30 13.68 8.30 -92.71 -0.77 12.91 15 21 H 0.12 5.02 4.26 -2.91 -0.01 5.00 15 22 H 0.14 4.77 5.31 -2.91 -0.02 4.76 15 23 H 0.12 3.26 6.15 -2.39 -0.01 3.25 15 24 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.12 1.91 8.14 -2.38 -0.02 1.89 15 26 H 0.13 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.12 5.48 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -56.61 255.06 4.83 -51.78 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.10 Total: 14.18 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 2.24 Total: -54.42 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.30 Total: -42.19 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.75 Total: -5.89 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.67 Total: 41.28 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.24 Total: -4.73 kcal Total: -56.61 4.83 -51.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215371523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.817 kcal (2) G-P(sol) polarization free energy of solvation -56.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds