Wall clock time and date at job start Mon Mar 30 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99964 * 2 1 4 4 C 1.38458 * 120.12818 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.25219 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.74596 * 180.02562 * 5 4 3 7 7 C 1.39587 * 120.50962 * 0.02562 * 5 4 3 8 8 S 1.76202 * 119.87578 * 179.97438 * 7 5 4 9 9 C 1.81395 * 103.00127 * 179.97438 * 8 7 5 10 10 C 1.38130 * 120.25142 * 359.97438 * 7 5 4 11 11 C 1.40627 * 119.73661 * 359.72565 * 10 7 5 12 12 C 1.41143 * 120.24586 * 180.29470 * 11 10 7 13 13 H 1.08000 * 119.99932 * 204.87342 * 12 11 10 14 14 C 1.39897 * 120.00070 * 24.87884 * 12 11 10 15 15 N 1.30883 * 119.99452 * 17.65743 * 14 12 11 16 16 Si 1.86802 * 119.99820 * 197.65794 * 14 12 11 17 17 H 1.48492 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46684 * 119.99723 * 16 14 12 19 19 H 1.48500 * 109.47041 * 239.99783 * 16 14 12 20 20 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47314 * 59.99920 * 1 2 3 22 22 H 1.08996 * 109.46997 * 299.99740 * 1 2 3 23 23 H 1.07995 * 119.87170 * 359.97438 * 4 3 2 24 24 H 1.08998 * 109.47004 * 90.00376 * 6 5 4 25 25 H 1.08994 * 109.47551 * 210.00544 * 6 5 4 26 26 H 1.08999 * 109.46887 * 330.00292 * 6 5 4 27 27 H 1.08995 * 109.47532 * 300.00175 * 9 8 7 28 28 H 1.09003 * 109.47138 * 59.99913 * 9 8 7 29 29 H 1.09004 * 109.46943 * 179.97438 * 9 8 7 30 30 H 1.07997 * 120.13175 * 180.02562 * 10 7 5 31 31 H 0.97005 * 119.99484 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2935 2.3719 -0.0005 5 6 1.9181 3.6043 0.0000 6 6 1.0890 4.8627 0.0000 7 6 3.3111 3.6928 0.0005 8 16 4.0902 5.2732 0.0005 9 6 5.8560 4.8577 0.0021 10 6 4.0813 2.5461 0.0011 11 6 3.4565 1.2862 0.0069 12 6 4.2329 0.1076 0.0138 13 1 3.8218 -0.8122 -0.3753 14 6 5.5351 0.1308 0.5248 15 7 5.9173 1.1155 1.2976 16 14 6.7281 -1.2437 0.1039 17 1 6.0556 -2.2296 -0.7796 18 1 7.9094 -0.6769 -0.5950 19 1 7.1675 -1.9173 1.3523 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 0.2150 2.3154 -0.0014 24 1 0.8887 5.1659 1.0276 25 1 1.6323 5.6559 -0.5135 26 1 0.1461 4.6766 -0.5142 27 1 6.0913 4.2747 0.8924 28 1 6.0927 4.2739 -0.8875 29 1 6.4450 5.7749 0.0018 30 1 5.1589 2.6168 0.0019 31 1 6.8203 1.1317 1.6516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215393323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:55 Heat of formation + Delta-G solvation = -30.701792 kcal Electronic energy + Delta-G solvation = -14881.541282 eV Core-core repulsion = 12446.927198 eV Total energy + Delta-G solvation = -2434.614084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.71478 -36.26951 -34.03151 -31.13614 -29.44391 -27.95893 -27.38575 -26.55183 -23.73406 -20.98172 -20.35996 -17.66508 -16.32936 -15.67511 -15.45651 -14.69728 -14.49869 -13.83007 -13.41575 -13.16958 -12.99420 -12.68232 -12.60416 -12.01177 -11.63355 -11.58100 -11.26503 -11.16402 -11.08393 -10.64146 -10.52607 -10.23252 -10.06263 -9.71817 -9.23108 -9.13194 -8.01487 -7.44594 -6.83730 -6.21746 -4.28974 2.51246 2.62839 2.79300 3.06680 3.10582 3.14228 3.39455 3.92682 4.45829 4.51810 5.46021 5.67920 5.73676 5.79389 5.80851 5.90772 5.98621 6.09030 6.19674 6.34625 6.37806 6.55987 6.82143 7.01615 7.18368 7.22541 7.53829 7.58498 7.80602 8.05795 8.31053 8.61375 8.78227 8.99625 10.15562 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.011848 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.277084 B = 2362.601884 C = 3829.508505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.019 3.981 4 C -0.164 4.164 5 C -0.160 4.160 6 C -0.088 4.088 7 C -0.078 4.078 8 S -0.169 6.169 9 C -0.134 4.134 10 C -0.154 4.154 11 C 0.106 3.894 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.798 5.798 16 Si 0.908 3.092 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.274 1.274 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.102 0.898 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 2.684 -1.704 4.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.027 4.027 4 C -0.185 4.185 5 C -0.166 4.166 6 C -0.145 4.145 7 C -0.190 4.190 8 S 0.070 5.930 9 C -0.302 4.302 10 C -0.179 4.179 11 C 0.101 3.899 12 C -0.472 4.472 13 H 0.103 0.897 14 C -0.144 4.144 15 N -0.424 5.424 16 Si 0.733 3.267 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.200 1.200 20 H 0.100 0.900 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.605 3.722 -1.561 4.804 hybrid contribution 0.862 -1.753 -0.004 1.953 sum -1.742 1.969 -1.565 3.060 Atomic orbital electron populations 1.22746 0.81662 1.01799 0.99990 1.85976 1.18291 1.28110 1.90150 1.19274 0.92334 0.82659 1.08439 1.20394 0.97326 0.91858 1.08894 1.18540 0.90998 0.93627 1.13450 1.20434 0.98071 0.95623 1.00401 1.20991 0.95206 0.94187 1.08586 1.84566 1.02386 1.11621 1.94426 1.23498 0.95751 1.04911 1.06066 1.21194 0.99473 0.89739 1.07488 1.16903 0.87328 0.93556 0.92078 1.19454 0.96645 0.96486 1.34621 0.89741 1.25899 0.98881 0.96951 0.92628 1.69849 1.19079 1.30861 1.22622 0.86251 0.79892 0.81291 0.79312 1.18283 1.19759 1.19987 0.89972 0.94175 0.94086 0.88051 0.93229 0.92533 0.93386 0.89396 0.90593 0.89271 0.84826 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.21 9.77 -18.77 -0.18 -7.39 16 3 C 0.02 0.46 6.72 -38.31 -0.26 0.21 16 4 C -0.16 -3.73 8.66 -39.53 -0.34 -4.07 16 5 C -0.16 -3.63 5.92 -104.15 -0.62 -4.24 16 6 C -0.09 -1.64 9.55 36.01 0.34 -1.30 16 7 C -0.08 -1.85 6.10 -39.12 -0.24 -2.09 16 8 S -0.17 -3.38 20.73 -107.50 -2.23 -5.61 16 9 C -0.13 -2.37 9.14 101.05 0.92 -1.44 16 10 C -0.15 -3.98 7.99 -38.72 -0.31 -4.29 16 11 C 0.11 2.87 5.58 -106.71 -0.60 2.27 16 12 C -0.44 -11.90 8.71 -37.86 -0.33 -12.23 16 13 H 0.08 2.26 7.64 -52.49 -0.40 1.86 16 14 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 15 N -0.80 -20.25 10.97 55.55 0.61 -19.64 16 16 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 21 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 22 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 23 H 0.10 2.00 6.28 -52.49 -0.33 1.67 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 26 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 28 H 0.08 1.36 7.74 -51.92 -0.40 0.96 16 29 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.13 3.43 3.96 -52.49 -0.21 3.23 16 31 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -28.29 271.94 -6.96 -35.26 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.71 Total: 3.45 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -0.52 Total: -23.88 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.61 Total: -19.64 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.18 Total: -7.39 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.23 Total: -5.61 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.29 -6.96 -35.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.557 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds