Wall clock time and date at job start Mon Mar 30 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99964 * 2 1 4 4 C 1.38458 * 120.12818 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.25219 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.74596 * 180.02562 * 5 4 3 7 7 C 1.39587 * 120.50962 * 0.02562 * 5 4 3 8 8 S 1.76202 * 119.87578 * 179.97438 * 7 5 4 9 9 C 1.81395 * 103.00127 * 179.97438 * 8 7 5 10 10 C 1.38130 * 120.25142 * 359.97438 * 7 5 4 11 11 C 1.40627 * 119.73661 * 359.72565 * 10 7 5 12 12 C 1.41143 * 120.24586 * 180.29470 * 11 10 7 13 13 H 1.08000 * 119.99932 * 204.87342 * 12 11 10 14 14 C 1.39897 * 120.00070 * 24.87884 * 12 11 10 15 15 N 1.30883 * 119.99452 * 17.65743 * 14 12 11 16 16 Si 1.86802 * 119.99820 * 197.65794 * 14 12 11 17 17 H 1.48492 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46684 * 119.99723 * 16 14 12 19 19 H 1.48500 * 109.47041 * 239.99783 * 16 14 12 20 20 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47314 * 59.99920 * 1 2 3 22 22 H 1.08996 * 109.46997 * 299.99740 * 1 2 3 23 23 H 1.07995 * 119.87170 * 359.97438 * 4 3 2 24 24 H 1.08998 * 109.47004 * 90.00376 * 6 5 4 25 25 H 1.08994 * 109.47551 * 210.00544 * 6 5 4 26 26 H 1.08999 * 109.46887 * 330.00292 * 6 5 4 27 27 H 1.08995 * 109.47532 * 300.00175 * 9 8 7 28 28 H 1.09003 * 109.47138 * 59.99913 * 9 8 7 29 29 H 1.09004 * 109.46943 * 179.97438 * 9 8 7 30 30 H 1.07997 * 120.13175 * 180.02562 * 10 7 5 31 31 H 0.97005 * 119.99484 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2935 2.3719 -0.0005 5 6 1.9181 3.6043 0.0000 6 6 1.0890 4.8627 0.0000 7 6 3.3111 3.6928 0.0005 8 16 4.0902 5.2732 0.0005 9 6 5.8560 4.8577 0.0021 10 6 4.0813 2.5461 0.0011 11 6 3.4565 1.2862 0.0069 12 6 4.2329 0.1076 0.0138 13 1 3.8218 -0.8122 -0.3753 14 6 5.5351 0.1308 0.5248 15 7 5.9173 1.1155 1.2976 16 14 6.7281 -1.2437 0.1039 17 1 6.0556 -2.2296 -0.7796 18 1 7.9094 -0.6769 -0.5950 19 1 7.1675 -1.9173 1.3523 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 0.2150 2.3154 -0.0014 24 1 0.8887 5.1659 1.0276 25 1 1.6323 5.6559 -0.5135 26 1 0.1461 4.6766 -0.5142 27 1 6.0913 4.2747 0.8924 28 1 6.0927 4.2739 -0.8875 29 1 6.4450 5.7749 0.0018 30 1 5.1589 2.6168 0.0019 31 1 6.8203 1.1317 1.6516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215393323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:55 Heat of formation + Delta-G solvation = -46.248878 kcal Electronic energy + Delta-G solvation = -14882.215454 eV Core-core repulsion = 12446.927198 eV Total energy + Delta-G solvation = -2435.288256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46811 -38.00573 -35.86087 -32.90584 -31.14564 -29.59639 -29.00016 -28.06329 -25.50757 -22.76587 -22.13238 -19.50790 -18.00895 -17.50761 -17.13497 -16.29801 -16.17163 -15.44872 -15.11233 -14.72064 -14.58205 -14.37598 -14.11485 -13.57097 -13.36192 -13.12582 -12.83606 -12.82246 -12.65061 -12.34776 -12.14990 -11.96443 -11.70583 -11.44586 -11.05312 -10.84018 -9.71863 -9.31239 -8.67531 -7.91137 -6.23281 0.81630 0.93732 0.95549 1.36759 1.44888 1.51674 1.74553 2.21253 2.63985 2.90391 3.56923 4.23136 4.31062 4.36243 4.39191 4.48873 4.51200 4.58535 4.74910 4.89604 4.93469 5.04987 5.08915 5.17303 5.33634 5.40088 5.73618 5.75806 5.97333 6.23291 6.41728 6.73370 6.88036 7.19021 8.33844 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.011848 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.277084 B = 2362.601884 C = 3829.508505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.004 3.996 4 C -0.169 4.169 5 C -0.162 4.162 6 C -0.084 4.084 7 C -0.105 4.105 8 S -0.144 6.144 9 C -0.130 4.130 10 C -0.172 4.172 11 C 0.064 3.936 12 C -0.481 4.481 13 H 0.069 0.931 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.978 3.022 17 H -0.263 1.263 18 H -0.261 1.261 19 H -0.266 1.266 20 H 0.112 0.888 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.133 0.867 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 3.563 -1.893 5.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.041 4.041 4 C -0.189 4.189 5 C -0.168 4.168 6 C -0.141 4.141 7 C -0.217 4.217 8 S 0.095 5.905 9 C -0.298 4.298 10 C -0.197 4.197 11 C 0.060 3.940 12 C -0.511 4.511 13 H 0.087 0.913 14 C -0.178 4.178 15 N -0.453 5.453 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.185 1.185 19 H -0.191 1.191 20 H 0.130 0.870 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.150 0.850 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.162 4.614 -1.748 5.860 hybrid contribution 0.891 -1.934 0.063 2.130 sum -2.271 2.680 -1.685 3.896 Atomic orbital electron populations 1.23104 0.78532 1.04283 1.01043 1.85923 1.21603 1.27728 1.90101 1.19491 0.92291 0.84057 1.08310 1.20752 0.98862 0.91209 1.08057 1.19179 0.91261 0.95369 1.10965 1.20469 0.98477 0.93573 1.01581 1.21402 0.96281 0.95743 1.08266 1.84304 1.03420 1.08694 1.94108 1.23548 0.94845 1.06480 1.04927 1.21217 0.99457 0.90391 1.08591 1.17340 0.88901 0.94251 0.93506 1.19526 0.98378 0.96224 1.36975 0.91273 1.26643 0.99768 0.99451 0.91911 1.69880 1.19855 1.32424 1.23127 0.85224 0.77608 0.78139 0.79165 1.18689 1.18497 1.19076 0.86985 0.92761 0.93109 0.84955 0.92030 0.92042 0.90917 0.91095 0.91187 0.85399 0.85600 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.81 113.37 1.11 1.93 16 2 O -0.34 -15.87 9.77 -90.08 -0.88 -16.75 16 3 C 0.00 0.23 6.72 23.09 0.16 0.38 16 4 C -0.17 -7.49 8.66 22.30 0.19 -7.30 16 5 C -0.16 -7.12 5.92 -19.56 -0.12 -7.24 16 6 C -0.08 -2.88 9.55 71.24 0.68 -2.20 16 7 C -0.11 -4.98 6.10 22.57 0.14 -4.84 16 8 S -0.14 -5.57 20.73 -56.49 -1.17 -6.74 16 9 C -0.13 -4.46 9.14 113.37 1.04 -3.43 16 10 C -0.17 -9.13 7.99 22.83 0.18 -8.95 16 11 C 0.06 3.61 5.58 -21.21 -0.12 3.49 16 12 C -0.48 -27.07 8.71 23.39 0.20 -26.86 16 13 H 0.07 3.92 7.64 -2.91 -0.02 3.90 16 14 C 0.04 1.86 5.14 85.24 0.44 2.30 16 15 N -0.83 -43.08 10.97 21.82 0.24 -42.85 16 16 Si 0.98 39.24 29.60 68.60 2.03 41.27 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 20 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 21 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 22 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 23 H 0.13 4.89 6.28 -2.91 -0.02 4.87 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 2.05 6.75 -2.39 -0.02 2.04 16 26 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 27 H 0.07 2.70 7.74 -2.39 -0.02 2.69 16 28 H 0.07 2.49 7.74 -2.39 -0.02 2.47 16 29 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.13 6.71 3.96 -2.91 -0.01 6.70 16 31 H 0.29 13.45 8.30 -92.70 -0.77 12.69 16 Total: -1.00 -62.83 271.94 5.26 -57.58 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.13 Total: 20.20 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 3.91 Total: -52.72 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.24 Total: -42.85 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.88 Total: -16.75 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.17 Total: -6.74 kcal Total: -62.83 5.26 -57.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.330 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds