Wall clock time and date at job start Mon Mar 30 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35957 * 116.99939 * 2 1 4 4 C 1.37840 * 119.80813 * 354.70834 * 3 2 1 5 5 C 1.40674 * 119.79437 * 179.70405 * 4 3 2 6 6 C 1.40951 * 120.28651 * 180.29933 * 5 4 3 7 7 H 1.08003 * 120.00141 * 151.01802 * 6 5 4 8 8 C 1.39863 * 120.00040 * 331.02114 * 6 5 4 9 9 N 1.30911 * 120.00467 * 161.77892 * 8 6 5 10 10 Si 1.86800 * 119.99958 * 341.77486 * 8 6 5 11 11 H 1.48500 * 109.47335 * 90.99452 * 10 8 6 12 12 H 1.48494 * 109.47541 * 211.00131 * 10 8 6 13 13 H 1.48508 * 109.47117 * 331.00056 * 10 8 6 14 14 C 1.41673 * 119.43040 * 0.58499 * 5 4 3 15 15 S 1.76203 * 120.19750 * 179.70746 * 14 5 4 16 16 C 1.81002 * 100.00041 * 179.73018 * 15 14 5 17 17 C 1.38854 * 119.60689 * 359.44042 * 14 5 4 18 18 C 1.38010 * 120.19352 * 0.26720 * 17 14 5 19 19 C 1.50699 * 119.70629 * 180.02562 * 18 17 14 20 20 H 1.09003 * 109.47335 * 64.86712 * 1 2 3 21 21 H 1.09005 * 109.47157 * 184.86790 * 1 2 3 22 22 H 1.09005 * 109.47357 * 304.86456 * 1 2 3 23 23 H 1.08001 * 120.09739 * 0.02562 * 4 3 2 24 24 H 0.96997 * 120.00375 * 179.97438 * 9 8 6 25 25 H 1.09002 * 109.47009 * 179.97438 * 16 15 14 26 26 H 1.09000 * 109.47419 * 60.00059 * 16 15 14 27 27 H 1.09000 * 109.46803 * 299.99784 * 16 15 14 28 28 H 1.08006 * 119.90136 * 180.24959 * 17 14 5 29 29 H 1.08995 * 109.47623 * 90.00304 * 19 18 17 30 30 H 1.09005 * 109.47165 * 210.00285 * 19 18 17 31 31 H 1.08999 * 109.47279 * 329.99871 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2961 2.3626 -0.1103 5 6 1.9345 3.6161 -0.1040 6 6 1.1770 4.8001 -0.2098 7 1 1.5365 5.7133 0.2411 8 6 -0.0401 4.7924 -0.8988 9 7 -0.9064 5.7551 -0.7080 10 14 -0.4295 3.4085 -2.0914 11 1 -1.1385 2.3198 -1.3721 12 1 -1.2932 3.9245 -3.1836 13 1 0.8337 2.8807 -2.6668 14 6 3.3457 3.6780 0.0035 15 16 4.1668 5.2370 0.0057 16 6 5.8837 4.6878 0.1697 17 6 4.0776 2.5031 0.1128 18 6 3.4345 1.2820 0.1111 19 6 4.2395 0.0138 0.2309 20 1 -0.3634 0.4365 -0.9304 21 1 -0.3634 -1.0240 0.0872 22 1 -0.3634 0.5875 0.8432 23 1 0.2211 2.3025 -0.1961 24 1 -1.7504 5.7500 -1.1860 25 1 6.5428 5.5559 0.1870 26 1 6.1440 4.0513 -0.6760 27 1 5.9983 4.1256 1.0964 28 1 5.1534 2.5450 0.1991 29 1 4.3492 -0.2490 1.2830 30 1 3.7271 -0.7928 -0.2935 31 1 5.2246 0.1657 -0.2102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215393390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:21 Heat of formation + Delta-G solvation = -28.981982 kcal Electronic energy + Delta-G solvation = -14989.674091 eV Core-core repulsion = 12555.134583 eV Total energy + Delta-G solvation = -2434.539507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15351 -36.51365 -33.99411 -31.78944 -29.86059 -28.09421 -27.47179 -26.92379 -23.65754 -21.34169 -20.51658 -17.89753 -16.65881 -16.05781 -15.25820 -15.08876 -14.60716 -14.00477 -13.88501 -13.34976 -13.23056 -12.82401 -12.64757 -12.15411 -11.95641 -11.57003 -11.36502 -11.27289 -11.05129 -10.83736 -10.65053 -10.31580 -10.22475 -9.76060 -9.25063 -9.12107 -8.01827 -7.69816 -7.07871 -6.31587 -4.56034 2.44690 2.48822 2.65536 2.97173 3.12046 3.23931 3.51233 3.87692 4.04608 4.32524 5.21449 5.56258 5.56898 5.58353 5.65526 5.77243 5.90429 5.96558 6.06597 6.14273 6.31834 6.44628 6.48299 6.58644 6.75809 7.07813 7.26538 7.41440 7.62703 7.77456 8.11081 8.28420 8.53769 8.66110 9.93031 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.014557 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.698363 B = 1922.953945 C = 3359.766497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.327 6.327 3 C 0.163 3.837 4 C -0.313 4.313 5 C 0.137 3.863 6 C -0.429 4.429 7 H 0.102 0.898 8 C 0.087 3.913 9 N -0.795 5.795 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.289 1.289 13 H -0.244 1.244 14 C -0.208 4.208 15 S -0.113 6.113 16 C -0.157 4.157 17 C -0.054 4.054 18 C -0.227 4.227 19 C -0.077 4.077 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.288 0.712 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -6.243 -0.147 7.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.241 6.241 3 C 0.117 3.883 4 C -0.335 4.335 5 C 0.130 3.870 6 C -0.457 4.457 7 H 0.120 0.880 8 C -0.134 4.134 9 N -0.418 5.418 10 Si 0.739 3.261 11 H -0.195 1.195 12 H -0.217 1.217 13 H -0.168 1.168 14 C -0.321 4.321 15 S 0.127 5.873 16 C -0.325 4.325 17 C -0.078 4.078 18 C -0.231 4.231 19 C -0.134 4.134 20 H 0.066 0.934 21 H 0.106 0.894 22 H 0.071 0.929 23 H 0.132 0.868 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.968 -5.021 -0.257 6.405 hybrid contribution -0.216 -1.611 -0.397 1.674 sum 3.752 -6.633 -0.655 7.649 Atomic orbital electron populations 1.22976 0.79925 1.02342 1.01447 1.85924 1.20099 1.28663 1.89393 1.18591 0.91473 0.82917 0.95334 1.21035 0.98515 0.92289 1.21662 1.17063 0.89309 0.92241 0.88353 1.19430 1.00907 0.96808 1.28589 0.88047 1.26186 0.94202 0.96589 0.96423 1.69724 1.06496 1.31423 1.34130 0.86379 0.80033 0.80212 0.79506 1.19481 1.21652 1.16758 1.21468 0.95946 0.93809 1.20854 1.85366 0.98398 1.09881 1.93702 1.23575 0.99629 1.04935 1.04410 1.20396 0.97409 0.90856 0.99124 1.18329 0.90052 0.94477 1.20220 1.20241 0.97751 0.95312 1.00062 0.93400 0.89363 0.92879 0.86786 0.90181 0.89241 0.90860 0.90882 0.87508 0.93723 0.92797 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.33 -6.66 9.51 -19.61 -0.19 -6.85 16 3 C 0.16 3.71 6.65 -39.27 -0.26 3.44 16 4 C -0.31 -7.64 6.23 -38.81 -0.24 -7.88 16 5 C 0.14 3.53 5.14 -106.64 -0.55 2.98 16 6 C -0.43 -11.60 8.91 -37.95 -0.34 -11.94 16 7 H 0.10 2.90 7.29 -52.48 -0.38 2.52 16 8 C 0.09 2.25 5.41 -17.34 -0.09 2.16 16 9 N -0.79 -20.81 13.93 55.54 0.77 -20.03 16 10 Si 0.91 20.69 24.33 -169.99 -4.14 16.55 16 11 H -0.27 -5.68 5.42 56.52 0.31 -5.38 16 12 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.24 -5.83 7.02 56.52 0.40 -5.43 16 14 C -0.21 -4.92 6.19 -38.04 -0.24 -5.16 16 15 S -0.11 -2.37 21.29 -107.50 -2.29 -4.65 16 16 C -0.16 -2.45 8.98 101.05 0.91 -1.54 16 17 C -0.05 -1.15 8.80 -39.44 -0.35 -1.50 16 18 C -0.23 -4.89 5.91 -104.25 -0.62 -5.51 16 19 C -0.08 -1.35 9.77 36.01 0.35 -0.99 16 20 H 0.05 0.84 6.42 -51.93 -0.33 0.50 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.05 0.90 7.60 -51.93 -0.39 0.51 16 23 H 0.11 2.72 2.77 -52.49 -0.15 2.57 16 24 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 25 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 26 H 0.07 1.09 7.54 -51.92 -0.39 0.70 16 27 H 0.07 1.09 7.54 -51.92 -0.39 0.70 16 28 H 0.11 1.97 5.48 -52.48 -0.29 1.68 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 31 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -28.00 263.36 -5.94 -33.93 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.64 Total: 1.54 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.43 Total: -24.46 kcal Atomic # 7 Polarization: -20.81 SS G_CDS: 0.77 Total: -20.03 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.19 Total: -6.85 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.14 Total: 16.55 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.29 Total: -4.65 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.00 -5.94 -33.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.952 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds