Wall clock time and date at job start Mon Mar 30 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35957 * 116.99939 * 2 1 4 4 C 1.37840 * 119.80813 * 354.70834 * 3 2 1 5 5 C 1.40674 * 119.79437 * 179.70405 * 4 3 2 6 6 C 1.40951 * 120.28651 * 180.29933 * 5 4 3 7 7 H 1.08003 * 120.00141 * 151.01802 * 6 5 4 8 8 C 1.39863 * 120.00040 * 331.02114 * 6 5 4 9 9 N 1.30911 * 120.00467 * 161.77892 * 8 6 5 10 10 Si 1.86800 * 119.99958 * 341.77486 * 8 6 5 11 11 H 1.48500 * 109.47335 * 90.99452 * 10 8 6 12 12 H 1.48494 * 109.47541 * 211.00131 * 10 8 6 13 13 H 1.48508 * 109.47117 * 331.00056 * 10 8 6 14 14 C 1.41673 * 119.43040 * 0.58499 * 5 4 3 15 15 S 1.76203 * 120.19750 * 179.70746 * 14 5 4 16 16 C 1.81002 * 100.00041 * 179.73018 * 15 14 5 17 17 C 1.38854 * 119.60689 * 359.44042 * 14 5 4 18 18 C 1.38010 * 120.19352 * 0.26720 * 17 14 5 19 19 C 1.50699 * 119.70629 * 180.02562 * 18 17 14 20 20 H 1.09003 * 109.47335 * 64.86712 * 1 2 3 21 21 H 1.09005 * 109.47157 * 184.86790 * 1 2 3 22 22 H 1.09005 * 109.47357 * 304.86456 * 1 2 3 23 23 H 1.08001 * 120.09739 * 0.02562 * 4 3 2 24 24 H 0.96997 * 120.00375 * 179.97438 * 9 8 6 25 25 H 1.09002 * 109.47009 * 179.97438 * 16 15 14 26 26 H 1.09000 * 109.47419 * 60.00059 * 16 15 14 27 27 H 1.09000 * 109.46803 * 299.99784 * 16 15 14 28 28 H 1.08006 * 119.90136 * 180.24959 * 17 14 5 29 29 H 1.08995 * 109.47623 * 90.00304 * 19 18 17 30 30 H 1.09005 * 109.47165 * 210.00285 * 19 18 17 31 31 H 1.08999 * 109.47279 * 329.99871 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2961 2.3626 -0.1103 5 6 1.9345 3.6161 -0.1040 6 6 1.1770 4.8001 -0.2098 7 1 1.5365 5.7133 0.2411 8 6 -0.0401 4.7924 -0.8988 9 7 -0.9064 5.7551 -0.7080 10 14 -0.4295 3.4085 -2.0914 11 1 -1.1385 2.3198 -1.3721 12 1 -1.2932 3.9245 -3.1836 13 1 0.8337 2.8807 -2.6668 14 6 3.3457 3.6780 0.0035 15 16 4.1668 5.2370 0.0057 16 6 5.8837 4.6878 0.1697 17 6 4.0776 2.5031 0.1128 18 6 3.4345 1.2820 0.1111 19 6 4.2395 0.0138 0.2309 20 1 -0.3634 0.4365 -0.9304 21 1 -0.3634 -1.0240 0.0872 22 1 -0.3634 0.5875 0.8432 23 1 0.2211 2.3025 -0.1961 24 1 -1.7504 5.7500 -1.1860 25 1 6.5428 5.5559 0.1870 26 1 6.1440 4.0513 -0.6760 27 1 5.9983 4.1256 1.0964 28 1 5.1534 2.5450 0.1991 29 1 4.3492 -0.2490 1.2830 30 1 3.7271 -0.7928 -0.2935 31 1 5.2246 0.1657 -0.2102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215393390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:20 Heat of formation + Delta-G solvation = -45.906778 kcal Electronic energy + Delta-G solvation = -14990.408005 eV Core-core repulsion = 12555.134583 eV Total energy + Delta-G solvation = -2435.273422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82303 -38.19578 -35.82466 -33.55501 -31.44492 -29.65203 -29.01897 -28.37520 -25.39675 -23.03866 -22.25984 -19.74089 -18.39992 -17.73294 -16.90120 -16.64941 -16.39263 -15.67431 -15.47054 -15.00182 -14.63229 -14.37097 -14.10512 -13.79915 -13.43934 -13.13202 -12.99439 -12.75502 -12.67875 -12.47755 -12.29987 -12.00554 -11.98353 -11.54452 -11.04499 -10.75560 -9.72591 -9.46329 -8.98865 -8.04178 -6.49563 0.64805 0.69255 1.12243 1.16120 1.31555 1.40153 1.92248 2.05014 2.47750 2.52520 3.33389 4.08736 4.28558 4.30161 4.38678 4.40394 4.41179 4.57438 4.62446 4.74331 4.85545 4.89018 4.97069 4.99699 5.12390 5.33294 5.49862 5.72953 5.78903 6.05337 6.17265 6.42070 6.70241 6.76378 8.08490 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.014557 C = 0.008332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.698363 B = 1922.953945 C = 3359.766497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.150 3.850 4 C -0.324 4.324 5 C 0.112 3.888 6 C -0.463 4.463 7 H 0.068 0.932 8 C 0.053 3.947 9 N -0.835 5.835 10 Si 0.958 3.042 11 H -0.246 1.246 12 H -0.274 1.274 13 H -0.265 1.265 14 C -0.221 4.221 15 S -0.166 6.166 16 C -0.138 4.138 17 C -0.056 4.056 18 C -0.222 4.222 19 C -0.074 4.074 20 H 0.041 0.959 21 H 0.133 0.867 22 H 0.048 0.952 23 H 0.114 0.886 24 H 0.296 0.704 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -8.934 -0.279 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.240 6.240 3 C 0.103 3.897 4 C -0.346 4.346 5 C 0.106 3.894 6 C -0.492 4.492 7 H 0.086 0.914 8 C -0.163 4.163 9 N -0.460 5.460 10 Si 0.782 3.218 11 H -0.172 1.172 12 H -0.201 1.201 13 H -0.189 1.189 14 C -0.334 4.334 15 S 0.073 5.927 16 C -0.307 4.307 17 C -0.080 4.080 18 C -0.225 4.225 19 C -0.131 4.131 20 H 0.059 0.941 21 H 0.151 0.849 22 H 0.067 0.933 23 H 0.131 0.869 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.662 -7.720 -0.379 9.581 hybrid contribution -0.542 -0.896 -0.278 1.084 sum 5.120 -8.616 -0.657 10.044 Atomic orbital electron populations 1.23285 0.78131 1.05190 1.00899 1.85925 1.21895 1.27142 1.89023 1.18821 0.92351 0.83277 0.95238 1.21140 0.98851 0.92591 1.21971 1.17300 0.90629 0.92315 0.89133 1.19335 1.02437 0.96424 1.31009 0.91425 1.26771 0.93817 0.98469 0.97252 1.69743 1.07355 1.33111 1.35827 0.85677 0.79241 0.78615 0.78226 1.17155 1.20072 1.18904 1.21791 0.95725 0.95554 1.20296 1.85530 1.03206 1.10253 1.93719 1.23632 0.95038 1.06504 1.05494 1.20815 0.99118 0.89967 0.98067 1.18999 0.90154 0.96325 1.17024 1.20307 0.98299 0.93065 1.01439 0.94072 0.84850 0.93315 0.86879 0.89313 0.86382 0.89586 0.89599 0.84036 0.92126 0.92435 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.33 -12.42 9.51 -93.07 -0.89 -13.30 16 3 C 0.15 6.56 6.65 22.47 0.15 6.71 16 4 C -0.32 -15.77 6.23 22.77 0.14 -15.62 16 5 C 0.11 5.92 5.14 -21.17 -0.11 5.81 16 6 C -0.46 -26.36 8.91 23.33 0.21 -26.15 16 7 H 0.07 4.18 7.29 -2.91 -0.02 4.16 16 8 C 0.05 2.88 5.41 85.22 0.46 3.34 16 9 N -0.84 -45.70 13.93 21.82 0.30 -45.40 16 10 Si 0.96 43.20 24.33 68.60 1.67 44.87 16 11 H -0.25 -10.04 5.42 99.48 0.54 -9.50 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 13 H -0.26 -12.66 7.02 99.48 0.70 -11.96 16 14 C -0.22 -10.42 6.19 23.27 0.14 -10.27 16 15 S -0.17 -7.00 21.29 -56.49 -1.20 -8.20 16 16 C -0.14 -3.87 8.98 113.37 1.02 -2.86 16 17 C -0.06 -2.25 8.80 22.36 0.20 -2.05 16 18 C -0.22 -8.89 5.91 -19.62 -0.12 -9.01 16 19 C -0.07 -2.27 9.77 71.24 0.70 -1.57 16 20 H 0.04 1.34 6.42 -2.39 -0.02 1.33 16 21 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 22 H 0.05 1.57 7.60 -2.38 -0.02 1.55 16 23 H 0.11 5.39 2.77 -2.91 -0.01 5.38 16 24 H 0.30 14.48 8.30 -92.71 -0.77 13.71 16 25 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.09 2.23 7.54 -2.40 -0.02 2.21 16 27 H 0.09 2.22 7.54 -2.40 -0.02 2.20 16 28 H 0.14 4.61 5.48 -2.91 -0.02 4.60 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.73 7.51 -2.38 -0.02 1.72 16 31 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 Total: -1.00 -63.11 263.36 4.75 -58.36 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.96 Total: 13.62 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 3.90 Total: -49.95 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.30 Total: -45.40 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.89 Total: -13.30 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.67 Total: 44.87 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.20 Total: -8.20 kcal Total: -63.11 4.75 -58.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215393390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.449 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds